Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G66190.1 | CDX94134 | AT4G22890.1 | 18243102 |
| AT5G66190.1 | CDY10819 | AT4G22890.1 | 18243102 |
| AT5G66190.1 | CDY41285 | AT4G22890.1 | 18243102 |
| AT5G66190.1 | CDY68977 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23149 | Canola | endoplasmic reticulum, plastid | 24.86 | 25.75 |
| AT5G66190.1 | Thale cress | plastid | 49.71 | 23.89 |
| CDX81408 | Canola | plastid | 49.13 | 23.42 |
| CDY18592 | Canola | plastid | 48.55 | 23.2 |
| KRH69775 | Soybean | plastid | 46.82 | 22.38 |
| KRH28804 | Soybean | plastid | 46.82 | 22.38 |
| KRH08061 | Soybean | nucleus, plastid | 46.82 | 22.38 |
| GSMUA_Achr1P02830_001 | Banana | plastid | 46.24 | 22.22 |
| GSMUA_Achr11P... | Banana | plastid | 45.66 | 22.07 |
| VIT_04s0023g03510.t01 | Wine grape | plastid | 45.66 | 21.82 |
| Zm00001d045575_P001 | Maize | plastid | 43.93 | 21.41 |
| TraesCS6D01G012200.1 | Wheat | plastid, unclear | 44.51 | 21.33 |
| EER89050 | Sorghum | plastid | 44.51 | 21.33 |
| TraesCS6B01G015000.1 | Wheat | plastid | 44.51 | 21.21 |
| CDY55097 | Canola | vacuole | 46.24 | 21.11 |
| Os02t0103800-01 | Rice | plastid | 44.51 | 21.04 |
| Os06t0107700-01 | Rice | plastid | 43.93 | 20.99 |
| Solyc02g062130.2.1 | Tomato | plastid | 43.93 | 20.99 |
| TraesCS6A01G009200.1 | Wheat | plastid | 43.93 | 20.94 |
| TraesCS7A01G020500.1 | Wheat | plastid | 43.35 | 20.78 |
| PGSC0003DMT400009192 | Potato | extracellular | 43.35 | 20.72 |
| TraesCS7D01G016800.1 | Wheat | plastid | 43.35 | 20.72 |
| TraesCS4A01G472500.1 | Wheat | plastid | 43.35 | 20.72 |
| CDY57601 | Canola | plastid | 43.93 | 20.71 |
| EES04249 | Sorghum | plastid | 43.93 | 20.65 |
| CDY43420 | Canola | plastid | 43.35 | 20.6 |
| Zm00001d011833_P001 | Maize | plastid | 43.93 | 20.6 |
| Solyc02g083810.2.1 | Tomato | plastid | 43.93 | 20.54 |
| CDY62940 | Canola | plastid | 43.35 | 20.22 |
| CDX83730 | Canola | plastid | 43.35 | 19.89 |
| HORVU6Hr1G000620.2 | Barley | plastid | 43.93 | 19.0 |
| GSMUA_Achr8P13460_001 | Banana | plastid | 45.66 | 18.72 |
| HORVU7Hr1G002210.8 | Barley | plastid | 36.42 | 17.5 |
| Zm00001d042049_P001 | Maize | plastid | 43.93 | 15.61 |
| CDY02299 | Canola | plastid | 26.59 | 12.04 |
| CDY09570 | Canola | plastid | 26.59 | 12.04 |
| CDY39167 | Canola | plastid | 26.01 | 11.9 |
| CDY46362 | Canola | plastid | 25.43 | 11.64 |
| CDY51794 | Canola | plastid | 16.18 | 11.57 |
| CDY57760 | Canola | plastid | 49.13 | 8.47 |
| CDY20886 | Canola | mitochondrion, plastid | 7.51 | 6.02 |
| CDY40011 | Canola | cytosol, mitochondrion, peroxisome | 7.51 | 5.53 |
Protein Annotations
| EnsemblPlants:CDX83820 | EnsemblPlantsGene:GSBRNA2T00139576001 | Gene3D:3.40.50.80 | GO:A0A078D3T3 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:OxRdtase_FAD/NAD-bd | PANTHER:PTHR43314 |
| PANTHER:PTHR43314:SF7 | PFAM:PF00175 | ProteinID:CDX83820 | ProteinID:CDX83820.1 | SEG:seg | SUPFAM:SSF52343 |
| TMHMM:TMhelix | UniParc:UPI0004EE0B8D | MapMan:50.1.17 | : | : | : |
Description
BnaC08g18250D
Coordinates
chrLK031834:-:646413..647309
Molecular Weight (calculated)
19983.6 Da
IEP (calculated)
8.479
GRAVY (calculated)
-0.010
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MAISPLSSAK THSLCSMFLL LCFFFYVLCF VVLVCSSSSA QFCISSLVSS NPTISHKRHE SGNWRFVLLL PFLQRFGMAL LGCIHKHLTA LQGEQTNEKG
101: EKMYIQTRMA EYAEELWELL KKKDNTFVYM CGLKGMEKGI DEIMISLSGK DRIDWLEYKK QLKRSEQRNV EIY
101: EKMYIQTRMA EYAEELWELL KKKDNTFVYM CGLKGMEKGI DEIMISLSGK DRIDWLEYKK QLKRSEQRNV EIY
001: MTLPVRLGTL SSPPKVPYRE GQSIGVIPEG IDKNGKPHKL RLYSIASSAI GDFGDSKTVS LCVKRLVYTN DGGEIVKGVC SNFLCDLKPG DEAKITGPVG
101: KEMLMPKDPN ATIIMLGTGT GIAPFRSFLW KMFFEEHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMKEK NPDNFRLDFA VSREQTNEKG EKMYIQTRMA
201: EYAEELWELL KKDNTFVYMC GLKGMEKGID DIMVSLAAKD GIDWLEYKKQ LKRSEQWNVE VY
101: KEMLMPKDPN ATIIMLGTGT GIAPFRSFLW KMFFEEHEDY KFNGLAWLFL GVPTSSSLLY KEEFEKMKEK NPDNFRLDFA VSREQTNEKG EKMYIQTRMA
201: EYAEELWELL KKDNTFVYMC GLKGMEKGID DIMVSLAAKD GIDWLEYKKQ LKRSEQWNVE VY
Arabidopsis Description
LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.