Factsheet for GSMUA_Achr11P01430_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12240_001
GSMUA_Achr4P28830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66190.1	GSMUA_Achr2P12240_001	AT4G22890.1	18243102
AT5G66190.1	GSMUA_Achr4P28830_001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02830_001	Banana	plastid	86.31	85.83
KRH69775	Soybean	plastid	84.36	83.43
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	84.36	83.2
KRH08061	Soybean	nucleus, plastid	84.08	83.15
KRH28804	Soybean	plastid	83.8	82.87
VIT_04s0023g03510.t01	Wine grape	plastid	83.52	82.6
AT5G66190.1	Thale cress	plastid	81.56	81.11
Solyc02g062130.2.1	Tomato	plastid	81.01	80.11
CDX81408	Canola	plastid	81.01	79.89
CDY18592	Canola	plastid	80.45	79.56
PGSC0003DMT400009192	Potato	extracellular	80.17	79.28
Bra037182.1-P	Field mustard	plastid	80.17	79.06
Os06t0107700-01	Rice	plastid	77.93	77.07
EER89050	Sorghum	plastid	77.65	77.01
Zm00001d045575_P001	Maize	plastid	75.42	76.06
GSMUA_Achr8P13460_001	Banana	plastid	89.11	75.59
TraesCS7D01G016800.1	Wheat	plastid	75.7	74.86
Zm00001d011833_P001	Maize	plastid	76.82	74.53
EES04249	Sorghum	plastid	76.54	74.46
TraesCS4A01G472500.1	Wheat	plastid	74.58	73.76
TraesCS6D01G012200.1	Wheat	plastid, unclear	74.3	73.68
TraesCS7A01G020500.1	Wheat	plastid	74.3	73.68
TraesCS6B01G015000.1	Wheat	plastid	74.3	73.28
Solyc02g083810.2.1	Tomato	plastid	75.7	73.24
Os02t0103800-01	Rice	plastid	74.58	72.95
TraesCS6A01G009200.1	Wheat	plastid	73.18	72.18
HORVU7Hr1G002210.8	Barley	plastid	70.95	70.56
HORVU6Hr1G000620.2	Barley	plastid	74.3	66.5
CDY55097	Canola	vacuole	69.27	65.44
Zm00001d042049_P001	Maize	plastid	76.26	56.06
CDX83820	Canola	endoplasmic reticulum, plasma membrane	22.07	45.66
GSMUA_Achr4P31670_001	Banana	plastid	45.53	42.78
GSMUA_Achr4P28350_001	Banana	plastid	43.3	41.55
CDY57760	Canola	plastid	79.33	28.29

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:FNR	InterPro:FNR_plant_Cyanobacteria
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G01430_001	EnsemblPlants:GSMUA_Achr11P01430_001	EnsemblPlants:GSMUA_Achr11T01430_001
InterPro:IPR017927	UniProt:M0RNH3	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PIRSF:PIRSF000361	PIRSF:PIRSF501178
PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF7	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343
SUPFAM:SSF63380	UniParc:UPI000295FA96	:	:	:	:

Description

Ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G01430_001]

Coordinates

chr11:+:974556..976593

Molecular Weight (calculated)

39782.9 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.382

Length

358 amino acids

Sequence
(BLAST)

001: MATAAVTAAV SLPSSKSSAL NRTPSVSPAA RLQSRKVPAA DARKLVSVRA QVTTEAPAKV AKVSKKDDEG VVTNKFKPKD PYTGTCLLNT KITGDDAPGE
101: TWHMVFSTEG EIPYREGQSI GVIPDGVDKN GKPHKLRLYS IASSALGDFG DSKTVSLCVK RLVYTNEQGE IVKGVCSNFL CDLKPGADVK ITGPVGKEML
201: MPKDPNATII MLATGTGIAP FRSFLWKMFF EKHHDYKFNG LAWLFLGVPT SSSLLYKEEF EKMKEKSPDN FRVDYAVSRE QTNEKGEKMY IQTRMAEYAE
301: ELWQLLKKEN TYVYMCGLKG MEKGIDDIMV SLAAKDGIDW LTYKRELKRA EQWNVEVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.