Factsheet for HORVU6Hr1G000620.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

plastid: 15682463
plastid: 16758444

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102
AT5G66190.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G012200.1	Wheat	plastid, unclear	76.25	84.49
TraesCS6A01G009200.1	Wheat	plastid	75.0	82.64
TraesCS6B01G015000.1	Wheat	plastid	74.75	82.37
EES04249	Sorghum	plastid	72.5	78.8
Zm00001d011833_P001	Maize	plastid	70.25	76.15
VIT_04s0023g03510.t01	Wine grape	plastid	67.25	74.31
GSMUA_Achr11P...	Banana	plastid	66.5	74.3
Os02t0103800-01	Rice	plastid	67.75	74.04
KRH28804	Soybean	plastid	67.0	74.03
PGSC0003DMT400009192	Potato	extracellular	66.75	73.76
KRH69775	Soybean	plastid	66.75	73.76
KRH08061	Soybean	nucleus, plastid	66.5	73.48
Solyc02g062130.2.1	Tomato	plastid	66.0	72.93
AT5G66190.1	Thale cress	plastid	65.5	72.78
GSMUA_Achr1P02830_001	Banana	plastid	65.25	72.5
CDX81408	Canola	plastid	65.75	72.45
CDY18592	Canola	plastid	65.5	72.38
Bra037182.1-P	Field mustard	plastid	65.5	72.18
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	65.5	72.18
HORVU7Hr1G002210.8	Barley	plastid	61.75	68.61
Bra012203.1-P	Field mustard	plastid	62.25	67.85
CDY57601	Canola	plastid	62.25	67.85
Bra016481.1-P	Field mustard	plastid	61.5	67.58
AT1G20020.1	Thale cress	plastid	62.0	67.21
CDY43420	Canola	plastid	60.75	66.76
Solyc02g083810.2.1	Tomato	plastid	61.75	66.76
CDX83730	Canola	plastid	62.0	65.78
CDY62940	Canola	plastid	60.75	65.5
GSMUA_Achr8P13460_001	Banana	plastid	66.75	63.27
CDY55097	Canola	vacuole	59.25	62.53
Zm00001d042049_P001	Maize	plastid	71.75	58.93
CDX83820	Canola	endoplasmic reticulum, plasma membrane	19.0	43.93
HORVU5Hr1G103180.1	Barley	plastid	36.0	37.31
HORVU2Hr1G038830.1	Barley	plastid	37.25	34.65
CDY57760	Canola	plastid	65.0	25.9

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	UniProt:A0A287T437	InterPro:FNR
InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114
GO:GO:0098807	EnsemblPlantsGene:HORVU6Hr1G000620	EnsemblPlants:HORVU6Hr1G000620.2	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000B46665B	SEG:seg	:

Description

Ferredoxin--NADP reductase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287T437]

Coordinates

chrchr6H:+:1360672..1362906

Molecular Weight (calculated)

44541.1 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.470

Length

400 amino acids

Sequence
(BLAST)

001: QSTTCFSPRL PSTRSVASSH PKYHHPIHSH TARPHSLHPH STMAAQLTAA LPSYSPATTK TAGASSAASH FLYYPSRPRN ATRGVRAQVS TTETAEAAPA
101: KPVKISKKQD EGVVTNKYRP KEPYVGRCLL NTRLTGDNAP GETWHMVFST EGEVPYREGQ SIGVIADGED KNGKPHKLRL YSIASSALGD FGDSKTVSLC
201: VKRLVYTNDA GELVKGVCSN FLCDLKPGSE VKITGPVGKE MLMPKDPNAT IIMLATGTGI APFRSFLWKM FFEQHDDYKF NGLAWLFLGV PTSDTLLYKE
301: EFEKMVEIGG ENFRLDFAVS REQTNAAGEK MYIQTRMAEY KEELWEMLKK DNTYVYMCGL KGMEKGIDDI MVDLAAKDGI NWLDYKKQLK KAEQWNVEVY

Best Arabidopsis Sequence Match ( AT5G66190.1 )
(BLAST)

001: MAAAISAAVS LPSSKSSSLL TKISSVSPQR IFLKKSTVCY RRVVSVKAQV TTDTTEAPPV KVVKESKKQE EGIVVNKFKP KNPYTGRCLL NTKITGDDAP
101: GETWHIVFTT EGEVPYREGQ SIGVIPEGID KNGKPHKLRL YSIASSAIGD FGDSKTVSLC VKRLVYTNDG GEIVKGVCSN FLCDLKPGDE AKITGPVGKE
201: MLMPKDPNAT IIMLGTGTGI APFRSFLWKM FFEEHEDYKF NGLAWLFLGV PTSSSLLYKE EFEKMKEKNP DNFRLDFAVS REQTNEKGEK MYIQTRMAEY
301: AEELWELLKK DNTFVYMCGL KGMEKGIDDI MVSLAAKDGI DWLEYKKQLK RSEQWNVEVY

Arabidopsis Description

LFNR1Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKW6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.