Factsheet for HORVU7Hr1G002210.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 15682463

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102
AT5G66190.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G016800.1	Wheat	plastid	86.67	86.19
TraesCS7A01G020500.1	Wheat	plastid	83.89	83.66
TraesCS4A01G472500.1	Wheat	plastid	82.78	82.32
EER89050	Sorghum	plastid	73.89	73.68
Zm00001d045575_P001	Maize	plastid	72.5	73.52
Os06t0107700-01	Rice	plastid	73.61	73.2
KRH28804	Soybean	plastid	71.67	71.27
VIT_04s0023g03510.t01	Wine grape	plastid	71.39	70.99
GSMUA_Achr11P...	Banana	plastid	70.56	70.95
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	70.83	70.25
KRH08061	Soybean	nucleus, plastid	70.56	70.17
KRH69775	Soybean	plastid	69.72	69.34
PGSC0003DMT400009192	Potato	extracellular	69.44	69.06
Solyc02g062130.2.1	Tomato	plastid	68.89	68.51
Bra016481.1-P	Field mustard	plastid	69.17	68.41
Bra012203.1-P	Field mustard	plastid	69.44	68.12
AT5G66190.1	Thale cress	plastid	68.06	68.06
CDY57601	Canola	plastid	69.17	67.85
AT1G20020.1	Thale cress	plastid	69.17	67.48
GSMUA_Achr1P02830_001	Banana	plastid	67.22	67.22
CDY18592	Canola	plastid	67.5	67.13
Bra037182.1-P	Field mustard	plastid	67.5	66.94
CDX81408	Canola	plastid	67.22	66.67
CDY43420	Canola	plastid	66.94	66.21
CDY62940	Canola	plastid	68.06	66.04
CDX83730	Canola	plastid	68.61	65.52
Solyc02g083810.2.1	Tomato	plastid	64.72	62.97
HORVU6Hr1G000620.2	Barley	plastid	68.61	61.75
GSMUA_Achr8P13460_001	Banana	plastid	71.67	61.14
CDY55097	Canola	vacuole	58.61	55.67
CDX83820	Canola	endoplasmic reticulum, plasma membrane	17.5	36.42
HORVU5Hr1G103180.1	Barley	plastid	38.33	35.75
HORVU2Hr1G038830.1	Barley	plastid	39.44	33.02
CDY57760	Canola	plastid	66.67	23.9

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	UniProt:A0A287VDK5	InterPro:FNR
InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004324
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016491	GO:GO:0055114
GO:GO:0098807	EnsemblPlantsGene:HORVU7Hr1G002210	EnsemblPlants:HORVU7Hr1G002210.8	InterPro:IPR017927	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PIRSF:PIRSF000361	PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000B465ECC	SEG:seg	:

Description

Ferredoxin--NADP reductase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A287VDK5]

Coordinates

chrchr7H:-:4280606..4282822

Molecular Weight (calculated)

39053.8 Da

IEP (calculated)

7.754

GRAVY (calculated)

-0.165

Length

360 amino acids

Sequence
(BLAST)

001: MAAVTAAAVS LRAATTTSTS PSSAPQHSHC SFPSAARTVV SRRGALAIRA QAISTDAAAA APVKEKKVSK KQEEGVVTNT FRPKEPYVGK CLLNTKITAD
101: DAPGETWHMV FSTEGAVPYK EGQSIGVVAD GEDKNGKPHK LRLYSIASSA LGDFGDAKTV SLCVKRLVYT NDAGEVVKGV CSNFLCDLKP GADVNITGPV
201: GKEMLMPKDP NATIIMLATG TGIAPFRSFL WKMFFEKYDD YKFNGLAWLF LGVPTSSSLL YPEEFGKMKA KAPDNFRVDY AISREETNAA GEKMYIQTRM
301: AEYKDELWEL LKKDNTYVYM CGLKGMEKGI DEIMVPLAAK EGTATIHSSE FCFVLVDSIT

Best Arabidopsis Sequence Match ( AT1G20020.3 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GKIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.