Factsheet for Zm00001d045575_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 19688749
plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870

msms PMID: 19688749 doi

C Zörb, R Herbst, C Forreiter, S Schubert

Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20020.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G20020.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT5G66190.1	Zm00001d034904_P001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89050	Sorghum	plastid	86.48	85.04
Os06t0107700-01	Rice	plastid	80.0	78.45
VIT_04s0023g03510.t01	Wine grape	plastid	77.18	75.69
TraesCS7D01G016800.1	Wheat	plastid	77.18	75.69
KRH08061	Soybean	nucleus, plastid	77.18	75.69
GSMUA_Achr11P...	Banana	plastid	76.06	75.42
KRH69775	Soybean	plastid	76.9	75.41
KRH28804	Soybean	plastid	76.62	75.14
Zm00001d011833_P001	Maize	plastid	77.46	74.53
TraesCS4A01G472500.1	Wheat	plastid	75.49	74.03
TraesCS7A01G020500.1	Wheat	plastid	75.21	73.96
AT5G66190.1	Thale cress	plastid	74.93	73.89
GSMUA_Achr1P02830_001	Banana	plastid	74.65	73.61
PGSC0003DMT400009192	Potato	extracellular	74.93	73.48
CDX81408	Canola	plastid	74.93	73.28
CDY18592	Canola	plastid	74.65	73.2
Solyc02g062130.2.1	Tomato	plastid	74.65	73.2
Bra037182.1-P	Field mustard	plastid	74.65	73.0
VIT_18s0001g14450.t01	Wine grape	cytosol, plastid	74.37	72.73
HORVU7Hr1G002210.8	Barley	plastid	73.52	72.5
AT1G20020.1	Thale cress	plastid	74.65	71.82
Bra016481.1-P	Field mustard	plastid	73.52	71.7
Bra012203.1-P	Field mustard	plastid	74.08	71.66
CDY57601	Canola	plastid	73.8	71.39
CDY62940	Canola	plastid	72.39	69.27
CDY43420	Canola	plastid	70.99	69.23
CDX83730	Canola	plastid	72.68	68.44
Solyc02g083810.2.1	Tomato	plastid	70.7	67.84
GSMUA_Achr8P13460_001	Banana	plastid	76.34	64.22
CDY55097	Canola	vacuole	65.35	61.21
Zm00001d023296_P002	Maize	plastid	40.0	57.26
Zm00001d042049_P001	Maize	plastid	76.34	55.65
Zm00001d005458_P003	Maize	plastid	29.01	50.74
Zm00001d034099_P002	Maize	plastid	47.04	45.14
CDX83820	Canola	endoplasmic reticulum, plasma membrane	21.41	43.93
Zm00001d034345_P001	Maize	plastid	42.82	38.78
Zm00001d018794_P003	Maize	plastid	43.66	38.37
CDY57760	Canola	plastid	74.08	26.2

Protein Annotations

KEGG:00195+1.18.1.2	MapMan:1.1.5.2.1	PDB:1GAQ	PDB:1GAW	Gene3D:2.40.30.10	Gene3D:3.40.50.80
PDB:3W5U	PDB:3W5V	EMBL:AB035644	ProteinID:AQL02647.1	EMBL:BT055002	EMBL:EU959484
InterPro:FNR	InterPro:FNR_plant_Cyanobacteria	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003959	GO:GO:0004324	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016491	GO:GO:0016653	GO:GO:0022900	GO:GO:0055114	GO:GO:0098807
InterPro:IPR017927	InterPro:OxRdtase_FAD-bd_dom	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00970	PIRSF:PIRSF000361
PIRSF:PIRSF501178	PRINTS:PR00371	PFscan:PS51384	PANTHER:PTHR43314	PANTHER:PTHR43314:SF3	UniProt:Q9SLP6
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI00000A688C	EnsemblPlantsGene:Zm00001d045575	EnsemblPlants:Zm00001d045575_P001
EnsemblPlants:Zm00001d045575_T001	SEG:seg	:	:	:	:

Description

Ferredoxin--NADP reductase leaf isozyme 1 chloroplastic

Coordinates

chr9:+:27084919..27086859

Molecular Weight (calculated)

39325.2 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.341

Length

355 amino acids

Sequence
(BLAST)

001: MATVMAAAVS SFPSSSAVVA KASPASPCAA PHFRPRAVRA AIRAQASAVE APATAKAKKE SKKQEEGVVT NLYKPKEPYV GRCLLNTKIT GDDAPGETWH
101: MVFSTEGKIP YREGQSIGVI ADGVDKNGKP HKVRLYSIAS SAIGDFGDSK TVSLCVKRLI YTNDAGEIVK GVCSNFLCDL QPGDNVQITG PVGKEMLMPK
201: DPNATIIMLA TGTGIAPFRS FLWKMFFEKH DDYKFNGLGW LFLGVPTSSS LLYKEEFGKM KERAPENFRV DYAVSREQTN AAGERMYIQT RMAEYKEELW
301: ELLKKDNTYV YMCGLKGMEK GIDDIMVSLA EKDGIDWFDY KKQLKRGDQW NVEVY

Best Arabidopsis Sequence Match ( AT1G20020.3 )
(BLAST)

001: MATTMNAAVS LTSSNSSSFP ATSCAIAPER IRFTKGAFYY KSNNVVTGKR VFSIKAQITT ETDTPTPAKK VEKVSKKNEE GVIVNRYRPK EPYTGKCLLN
101: TKITADDAPG ETWHMVFSHQ GKIPYREGQS VGVIADGIDK NGKPHKVRLY SIASSALGDL GNSETVSLCV KRLVYTNDQG ETVKGVCSNF LCDLAPGSDV
201: KLTGPVGKEM LMPKDPNATV IMLATGTGIA PFRSFLWKMF FEKHDDYKFN GLAWLFLGVP TTSSLLYQEE FDKMKAKAPE NFRVDYAISR EQANDKGEKM
301: YIQTRMAQYA AELWELLKKD NTFVYMCGLK GMEKGIDDIM VSLAANDGID WFDYKKQLKK AEQWNVEVY

Arabidopsis Description

LFNR2Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W493]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.