Factsheet for Zm00001d034900_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G800780_P01
GRMZM5G884960_P01
Zm00001d011833_P001
Zm00001d013039_P001
Zm00001d034543_P001
Zm00001d035001_P001
Zm00001d035002_P001
Zm00001d035003_P001
Zm00001d042049_P001
Zm00001d045575_P001
Zm00001d049732_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	Zm00001d011833_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d042049_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d045575_P001	AT1G20020.1	18243102
AT4G22890.1	Zm00001d035001_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d035002_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d035003_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d049732_P001	AT1G60950.1	18243102
AT4G22890.1	Zm00001d013039_P001	AT4G02770.1	18243102
AT4G22890.1	Zm00001d034543_P001	AT4G02770.1	18243102
AT4G22890.1	Zm00001d011833_P001	AT5G66190.1	18243102
AT4G22890.1	Zm00001d042049_P001	AT5G66190.1	18243102
AT4G22890.1	Zm00001d045575_P001	AT5G66190.1	18243102
AT4G22890.1	GRMZM5G800780_P01	ATCG00720.1	18243102
AT4G22890.1	GRMZM5G884960_P01	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034904_P001	Maize	plastid	67.7	95.2
Os03t0857400-01	Rice	plasma membrane	72.67	72.22
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	61.49	70.21
TraesCS4A01G319000.1	Wheat	plastid	70.81	70.15
TraesCS5D01G569800.1	Wheat	plastid	70.5	70.06
TraesCS5B01G560400.1	Wheat	plastid	70.5	69.85
HORVU5Hr1G124210.2	Barley	plastid	70.5	69.63
KRH26378	Soybean	plasma membrane	31.99	69.59
KXG37086	Sorghum	plastid	84.78	67.24
GSMUA_Achr2P12240_001	Banana	plastid	64.91	66.14
KRH77457	Soybean	plastid	64.6	65.82
KRH57278	Soybean	plastid	64.29	64.49
PGSC0003DMT400032525	Potato	plastid	63.04	63.64
PGSC0003DMT400058521	Potato	plastid	63.04	63.44
CDY41285	Canola	plastid	62.73	63.32
Bra013653.1-P	Field mustard	plastid	62.73	63.32
CDX94134	Canola	plastid	62.73	63.12
CDY10819	Canola	plastid	62.42	63.01
KRH04003	Soybean	plastid	64.91	62.95
CDY68977	Canola	plastid	62.11	62.5
Bra000757.1-P	Field mustard	plastid	62.11	62.5
CDX90812	Canola	plastid	62.11	62.5
Bra019349.1-P	Field mustard	plastid	62.11	62.5
AT4G22890.1	Thale cress	plastid	62.42	62.04
Solyc08g080050.2.1	Tomato	plastid	59.32	62.01
CDY51552	Canola	plastid	61.49	61.88
VIT_02s0025g04710.t01	Wine grape	plastid	62.11	61.35
AT4G11960.1	Thale cress	plastid	59.63	61.34
Solyc08g007770.2.1	Tomato	plastid	58.07	60.91
Zm00001d019454_P001	Maize	plastid	63.35	60.9

Protein Annotations

EMBL:BT040345	EMBL:BT042018	EnsemblPlants:Zm00001d034900_P001	EnsemblPlants:Zm00001d034900_T001	EnsemblPlantsGene:Zm00001d034900	EntrezGene:100273908
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:ONM11705.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00017B8375	UniProt:B4FTA7	MapMan:1.1.6.1.2	:

Description

PGR5-like protein 1B chloroplastic

Coordinates

chr1:-:305107084..305113715

Molecular Weight (calculated)

36141.5 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.157

Length

322 amino acids

Sequence
(BLAST)

001: MASEVWLSPA SRLPSLSNAP PRLRSKPATT TASLLSPCPR PARALPVLRV RRRRRLRATE QQGQVQEQDD EVVDRNILPY CSIDRKQKKT LGEMEQEFLQ
101: ALQAFYYDQK AIMSNEEFDN LKEELMWEGS SVVMLNEDEQ KLLEASLAYT SGNPIMSDAE FDELKLRLKT DGSVIVKEGP RCSLRTHKVY SDLNVDYLKM
201: FLLNVPATTV ALGLFFFIDE LTGFEINVFQ LPEPFGFIFT WFAALPLILF LAQSLTKAIV QDFLILKGPC PNCGTENLSF FGTILSVSSG GTTNKVKCAN
301: CSTELEYDSK SRVITLPEAS NA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.