Factsheet for GRMZM5G800780_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 4
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plastid: 18453340
plastid: 20089766
plastid: 21196305
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 18453340 doi

W Majeran, B Zybailov, AJ Ytterberg, J Dunsmore, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 21196305

XY Liu, YD Wu, ZY Shen, Z Shen, HH Li, XM Yu, XF Yan, CH Guo, BC Wang

Key Laboratory of Forest Tree Genetic Improvement and Biotechnology, Ministry of Education, Northeast Forestry University, Harbin, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	Zm00001d019454_P001	AT4G22890.1	18243102
ATCG00720.1	Zm00001d034900_P001	AT4G22890.1	18243102
ATCG00720.1	Zm00001d034904_P001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	100.0	100.0
AGP50784	Barley	plastid	98.28	98.28
HORVU6Hr1G049420.1	Barley	mitochondrion	98.28	98.28
CAA33977	Rice	plasma membrane	90.95	98.14
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	97.84	97.84
TraesCS1D01G183000.1	Wheat	plastid	97.41	97.41
ATCG00720.1	Thale cress	plasma membrane	90.09	97.21
TraesCS6A01G192500.1	Wheat	plasma membrane	95.69	95.69
TraesCS5D01G221600.1	Wheat	plasma membrane	93.53	95.59
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.69	91.38
TraesCS1A01G130200.1	Wheat	mitochondrion	52.16	84.62
CDX71257	Canola	cytosol, plastid, vacuole	34.48	81.63
HORVU2Hr1G062090.1	Barley	plasma membrane	77.16	77.16
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	22.84	13.66
GRMZM5G884960_P01	Maize	plastid	8.19	10.92

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	UniProt:A0A1I7Q5G3	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900
GO:GO:0022904	GO:GO:0042651	GO:GO:0045158	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GRMZM5G800780
EnsemblPlants:GRMZM5G800780_P01	EnsemblPlants:GRMZM5G800780_T01	InterPro:IPR005797	InterPro:IPR027387	HAMAP:MF_00633	PFAM:PF00033
PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix
UniParc:UPI0000090E58	SEG:seg	:	:	:	:

Description

Cytochrome b6 [Source:UniProtKB/TrEMBL;Acc:A0A1I7Q5G3]

Coordinates

chrPt:+:73842..74543

Molecular Weight (calculated)

25965.2 Da

IEP (calculated)

9.206

GRAVY (calculated)

0.564

Length

232 amino acids

Sequence
(BLAST)

001: MKFSYTVLGG GVGLVTYLNK VYDWFEERLE IQAIADDITS KYVPPHVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPEAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.