Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G413000.1 | Wheat | mitochondrion | 78.87 | 97.45 |
| HORVU1Hr1G045710.1 | Barley | extracellular | 18.04 | 97.22 |
| BAC19890 | Rice | mitochondrion | 98.97 | 96.73 |
| HORVU5Hr1G072320.1 | Barley | golgi, mitochondrion, plasma membrane | 62.63 | 96.05 |
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 43.3 | 96.0 |
| BAV58143 | Barley | mitochondrion, plasma membrane | 98.45 | 95.98 |
| TraesCS7A01G237900.1 | Wheat | mitochondrion | 86.34 | 95.44 |
| TraesCS5A01G430300.1 | Wheat | plasma membrane | 48.45 | 94.95 |
| HORVU3Hr1G040840.1 | Barley | plasma membrane | 83.25 | 94.72 |
| TraesCS4D01G140500.1 | Wheat | mitochondrion, plasma membrane | 96.91 | 94.47 |
| TraesCS2D01G564500.1 | Wheat | mitochondrion | 93.56 | 94.04 |
| AT2G07727.1 | Thale cress | mitochondrion, plasma membrane | 94.33 | 93.13 |
| ATMG00220.1 | Thale cress | mitochondrion, plasma membrane | 94.33 | 93.13 |
| HORVU0Hr1G034150.1 | Barley | golgi, mitochondrion, plasma membrane | 67.53 | 92.25 |
| TraesCS7D01G239000.1 | Wheat | mitochondrion | 88.66 | 91.49 |
| TraesCS1A01G112900.1 | Wheat | mitochondrion | 85.82 | 89.28 |
| HORVU1Hr1G009360.1 | Barley | plasma membrane | 66.75 | 87.21 |
| HORVU7Hr1G044370.1 | Barley | plasma membrane | 64.95 | 84.85 |
| Solyc09g050020.1.1 | Tomato | nucleus | 76.29 | 81.32 |
| TraesCS4A01G150300.1 | Wheat | mitochondrion, plasma membrane | 87.37 | 81.3 |
| KRH57909 | Soybean | mitochondrion | 76.29 | 80.87 |
| HORVU3Hr1G045040.1 | Barley | cytosol | 39.18 | 71.7 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 44.33 | 65.15 |
| VIT_03s0110g00200.t01 | Wine grape | cytosol | 15.72 | 41.78 |
| GRMZM5G800780_P01 | Maize | plastid | 13.66 | 22.84 |
| GRMZM5G884960_P01 | Maize | plastid | 3.61 | 8.05 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:2.4.3.1 | EntrezGene:4055802 | ProteinID:AAR91052.1 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf |
| InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Cytochrome_b | InterPro:Di-haem_cyt_TM | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006139 | GO:GO:0006810 |
| GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016491 | GO:GO:0022904 | GO:GO:0045275 | GO:GO:0046872 | GO:GO:0055114 |
| GO:GO:0070469 | GO:GO:1902600 | EnsemblPlantsGene:GRMZM5G884707 | EnsemblPlants:GRMZM5G884707_P01 | EnsemblPlants:GRMZM5G884707_T01 | InterPro:IPR005797 |
| InterPro:IPR005798 | InterPro:IPR027387 | PFAM:PF00032 | PFAM:PF00033 | PIRSF:PIRSF038885 | PFscan:PS51002 |
| PFscan:PS51003 | PANTHER:PTHR19271 | PANTHER:PTHR19271:SF5 | UniProt:Q6R9D5 | SUPFAM:SSF81342 | SUPFAM:SSF81648 |
| TMHMM:TMhelix | UniParc:UPI0000233F38 | SEG:seg | : | : | : |
Description
Cytochrome b [Source:UniProtKB/TrEMBL;Acc:Q6R9D5]
Coordinates
chrMt:+:310906..312072
Molecular Weight (calculated)
43553.6 Da
IEP (calculated)
8.061
GRAVY (calculated)
0.572
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIRNQRFSL LKQPIYSTLN QHLIDYPTPS NLSYWWGFGS LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVH
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVP PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPLILAGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIASYPY FYVKDLVGRV ASAIFFSIWI FFAPNVLGHP DNYIPANPMP TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFISLLA LPFFKEMYVR SSSFRPIHQG IFWLLLADCL LLGWIGCQPV EAPFVTIGQI SSFFFFLFFA ITPIPGRVGR GIPKYYTE
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVP PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPLILAGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIASYPY FYVKDLVGRV ASAIFFSIWI FFAPNVLGHP DNYIPANPMP TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFISLLA LPFFKEMYVR SSSFRPIHQG IFWLLLADCL LLGWIGCQPV EAPFVTIGQI SSFFFFLFFA ITPIPGRVGR GIPKYYTE
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Arabidopsis Description
Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.