Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029797_P001 | Maize | cytosol | 96.43 | 98.54 |
| Zm00001d020144_P001 | Maize | mitochondrion | 69.29 | 85.84 |
| Zm00001d035637_P001 | Maize | mitochondrion | 33.57 | 83.93 |
| Zm00001d007011_P001 | Maize | cytosol | 33.57 | 82.46 |
| Os03t0606200-01 | Rice | mitochondrion | 28.57 | 68.97 |
| Bra002547.1-P | Field mustard | mitochondrion | 26.43 | 67.27 |
| Bra006702.1-P | Field mustard | mitochondrion | 26.43 | 67.27 |
| Bra020305.1-P | Field mustard | cytosol | 26.43 | 67.27 |
| AT5G59613.1 | Thale cress | cytosol, extracellular, mitochondrion, nucleus | 25.71 | 65.45 |
| AT3G46430.1 | Thale cress | cytosol, extracellular, mitochondrion, nucleus | 25.71 | 65.45 |
| TraesCS7D01G136800.1 | Wheat | unclear | 26.43 | 63.79 |
| Solyc06g060080.2.1 | Tomato | plastid | 25.0 | 63.64 |
| PGSC0003DMT400030756 | Potato | mitochondrion | 24.29 | 61.82 |
| KRH29857 | Soybean | mitochondrion | 24.29 | 61.82 |
| Solyc11g005050.1.1 | Tomato | mitochondrion | 24.29 | 61.82 |
| PGSC0003DMT400015500 | Potato | mitochondrion | 24.29 | 61.82 |
| Zm00001d011055_P001 | Maize | mitochondrion | 34.29 | 61.54 |
| TraesCS1A01G035800.1 | Wheat | golgi | 25.71 | 61.02 |
| TraesCS1B01G045700.1 | Wheat | mitochondrion | 25.71 | 61.02 |
| TraesCS1D01G037300.1 | Wheat | mitochondrion | 25.71 | 61.02 |
| TraesCS3D01G537200.1 | Wheat | mitochondrion | 23.57 | 60.0 |
| TraesCS3B01G602300.1 | Wheat | mitochondrion | 23.57 | 60.0 |
| KRH10301 | Soybean | mitochondrion | 22.86 | 58.18 |
| GSMUA_Achr2P19100_001 | Banana | cytosol | 27.14 | 57.58 |
| KRH24848 | Soybean | endoplasmic reticulum | 25.0 | 52.24 |
| VIT_06s0004g04380.t01 | Wine grape | cytosol | 17.86 | 48.08 |
| Zm00001d039458_P001 | Maize | cytosol | 82.14 | 34.95 |
| HORVU2Hr1G076650.1 | Barley | cytosol | 29.29 | 26.8 |
| KRH23016 | Soybean | mitochondrion | 22.14 | 25.62 |
Protein Annotations
| EnsemblPlants:Zm00001d042952_P001 | EnsemblPlants:Zm00001d042952_T001 | EnsemblPlantsGene:Zm00001d042952 | PANTHER:PTHR22874 | PANTHER:PTHR22874:SF6 | ProteinID:ONM36599.1 |
| SEG:seg | UniParc:UPI00084520C1 | UniProt:A0A1D6N7N2 | MapMan:2.4.6.1.7 | : | : |
Description
Transducin family protein / WD-40 repeat family protein
Coordinates
chr3:-:184729877..184731032
Molecular Weight (calculated)
16228.4 Da
IEP (calculated)
9.752
GRAVY (calculated)
-0.361
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTFDPWPVF FHREWKRNCP FLTGFTITGF IITKMTANFT EEDLKNSKFV QNIFSLLAQR ELSPRTKNQA KNLWTKPPRL DACPIESKFW GTYAQHDLLS
101: WAEAEFLHWW IPKDCPLTPS SKATIAAAFS TDGRVLASTR
101: WAEAEFLHWW IPKDCPLTPS SKATIAAAFS TDGRVLASTR
1: MRLFDPWPVF FKREWKRCWP FLTGFAVTGV LITKLTAGLT EEDAKNSKFV QQHRR
Arabidopsis Description
AT3g46430/F18L15_150 [Source:UniProtKB/TrEMBL;Acc:Q9SN96]
SUBAcon: [mitochondrion,extracellular,nucleus,cytosol]
SUBAcon: [mitochondrion,extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.