Factsheet for Zm00001d039458_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029797_P001	Maize	cytosol	34.95	83.94
Zm00001d042952_P001	Maize	cytosol	34.95	82.14
Zm00001d035637_P001	Maize	mitochondrion	13.68	80.36
Zm00001d007011_P001	Maize	cytosol	13.68	78.95
Zm00001d020144_P001	Maize	mitochondrion	25.23	73.45
Os03t0606200-01	Rice	mitochondrion	11.55	65.52
Bra002547.1-P	Field mustard	mitochondrion	10.64	63.64
Bra006702.1-P	Field mustard	mitochondrion	10.64	63.64
Bra020305.1-P	Field mustard	cytosol	10.64	63.64
Solyc06g060080.2.1	Tomato	plastid	10.33	61.82
AT3G46430.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	10.33	61.82
AT5G59613.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	10.33	61.82
TraesCS7D01G136800.1	Wheat	unclear	10.64	60.34
Zm00001d011055_P001	Maize	mitochondrion	14.29	60.26
PGSC0003DMT400015500	Potato	mitochondrion	10.03	60.0
Solyc11g005050.1.1	Tomato	mitochondrion	10.03	60.0
PGSC0003DMT400030756	Potato	mitochondrion	10.03	60.0
KRH29857	Soybean	mitochondrion	9.73	58.18
TraesCS1A01G035800.1	Wheat	golgi	10.33	57.63
TraesCS1B01G045700.1	Wheat	mitochondrion	10.33	57.63
TraesCS1D01G037300.1	Wheat	mitochondrion	10.33	57.63
TraesCS3B01G602300.1	Wheat	mitochondrion	9.42	56.36
TraesCS3D01G537200.1	Wheat	mitochondrion	9.42	56.36
KRH10301	Soybean	mitochondrion	9.12	54.55
GSMUA_Achr2P19100_001	Banana	cytosol	10.94	54.55
VIT_06s0004g04380.t01	Wine grape	cytosol	7.9	50.0
KRH24848	Soybean	endoplasmic reticulum	10.03	49.25
HORVU2Hr1G076650.1	Barley	cytosol	11.55	24.84
KRH23016	Soybean	mitochondrion	9.12	24.79

Protein Annotations

EnsemblPlants:Zm00001d039458_P001	EnsemblPlants:Zm00001d039458_T001	EnsemblPlantsGene:Zm00001d039458	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF958	ProteinID:ONM28893.1
SEG:seg	UniParc:UPI0008441942	UniProt:A0A1D6MHH7	MapMan:2.4.6.1.7	:	:

Description

Transducin family protein / WD-40 repeat family protein

Coordinates

chr3:-:4929664..4931699

Molecular Weight (calculated)

37948.2 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.340

Length

329 amino acids

Sequence
(BLAST)

001: MKTFDPWPVF FHREWKRNCP FLTGFTITGF IITKMTANFT EEDLKNSSSF RNTRSADQPA QRELSPRTKN QAKNLWTKPP RLDACPIESK FWGTYAQHDL
101: LSWAEAEFLH WWIPKDCPLT PSSKATICEH ICSLPSAVNT FWFIYLLARE TYMTRICFDS YAIVSDMSAA GLGLNKFCYA GLITAFKNKT PTTEETMAKI
201: LDFVGQSKGW QYVERVSKDI AENIMMNVLE EELYNLPTAE YVNRRGGFVF KQHTVYHVAL QACAELRSKE TLEALLEMFN KDNRDGSTYD AYMVMQAMRC
301: YLRCGDIDSA VKMFEEYSSS RSPPAELYA

Best Arabidopsis Sequence Match ( AT4G35850.1 )
(BLAST)

001: MKFLMQSISG RNRSLVRALV SRRYFASSPE EIAKRNYAND LSEYNTAVNS VTAQRRHYLL RDVYDDMKLD GVQPTADIFH SFVVGTMKGA RLSDAFFFRE
101: EMKAMGIAPD VNLYNFLIST CGKCKNGKEA IRVYDEMKRY DVKPNGQTFV CLLNACAVSG QLDLVYAIVR DMTAAGVGLN QFCYAGLITA HLNKQPRPDN
201: LSTKILEFVE QSKGWSAIDS SRKSAEDVMF SISEEELYNI PTADYSHRTR FLQRNLTVYH VAFSALADLK DVKATEALLE MLKKDGKDTD TYCMLQIMRC
301: YLHSQDFENG LKLFQDYMSA DKIPAMELYT TLIEGAMTGY TDNGMKIAQD TLIQMNERNF FLDPRTGSNL LLKAAGEKTG GYTVANMIWD LMLARNILPT
401: LAAVEAYYKG LKEREIPEDD PRLMLVTRTY NNLRLREGTL PNRR

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYR5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.