CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
mitochondrion 7
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29857	Soybean	mitochondrion	80.6	98.18
KRH10301	Soybean	mitochondrion	71.64	87.27
AT5G59613.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	68.66	83.64
AT3G46430.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	68.66	83.64
Bra002547.1-P	Field mustard	mitochondrion	67.16	81.82
Bra006702.1-P	Field mustard	mitochondrion	67.16	81.82
Bra020305.1-P	Field mustard	cytosol	67.16	81.82
Solyc06g060080.2.1	Tomato	plastid	65.67	80.0
Solyc11g005050.1.1	Tomato	mitochondrion	65.67	80.0
PGSC0003DMT400030756	Potato	mitochondrion	64.18	78.18
PGSC0003DMT400015500	Potato	mitochondrion	62.69	76.36
TraesCS3D01G537200.1	Wheat	mitochondrion	59.7	72.73
TraesCS3B01G602300.1	Wheat	mitochondrion	59.7	72.73
EES18900	Sorghum	cytosol	59.7	71.43
EER97598	Sorghum	cytosol	59.7	71.43
TraesCS7D01G136800.1	Wheat	unclear	61.19	70.69
Os03t0606200-01	Rice	mitochondrion	61.19	70.69
Zm00001d035637_P001	Maize	mitochondrion	58.21	69.64
TraesCS1A01G035800.1	Wheat	golgi	61.19	69.49
Zm00001d007011_P001	Maize	cytosol	58.21	68.42
TraesCS1D01G037300.1	Wheat	mitochondrion	59.7	67.8
TraesCS1B01G045700.1	Wheat	mitochondrion	59.7	67.8
GSMUA_Achr2P19100_001	Banana	cytosol	65.67	66.67
VIT_06s0004g04380.t01	Wine grape	cytosol	46.27	59.62
Zm00001d011055_P001	Maize	mitochondrion	55.22	47.44
KRH23016	Soybean	mitochondrion	59.7	33.06
Zm00001d042952_P001	Maize	cytosol	52.24	25.0
Zm00001d029797_P001	Maize	cytosol	50.75	24.82
HORVU2Hr1G076650.1	Barley	cytosol	55.22	24.18
Zm00001d020144_P001	Maize	mitochondrion	32.84	19.47
Zm00001d039458_P001	Maize	cytosol	49.25	10.03

Protein Annotations

EMBL:ACUP02007188	EnsemblPlants:KRH24848	EnsemblPlantsGene:GLYMA_12G066300	EntrezGene:100306502	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR34565	ProteinID:KRH24848	ProteinID:KRH24848.1	TMHMM:TMhelix	UniParc:UPI00023D0D14
UniProt:I1LQT9	MapMan:2.4.6.1.7	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:4875471..4878097

Molecular Weight (calculated)

7789.6 Da

IEP (calculated)

11.382

GRAVY (calculated)

-0.572

Length

67 amino acids

Sequence
(BLAST)

1: MRKFDPWPVF FKREWKRNWP FLVGFAVTGA LITKLSLGLT EEDAKNSKFV KAHKRVKNLP NAGSQKK

Best Arabidopsis Sequence Match ( AT5G59613.2 )
(BLAST)

1: MRLFDPWPVF FKREWKRCWP FLTGFAVTGV LITKLTAGLT EEDAKNSKFV QQHRR

Arabidopsis Description

AT3g46430/F18L15_150 [Source:UniProtKB/TrEMBL;Acc:Q9SN96]
SUBAcon: [mitochondrion,extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.