CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29857	Soybean	mitochondrion	89.09	89.09
AT5G59613.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	80.0	80.0
AT3G46430.1	Thale cress	cytosol, extracellular, mitochondrion, nucleus	80.0	80.0
Bra002547.1-P	Field mustard	mitochondrion	78.18	78.18
Bra006702.1-P	Field mustard	mitochondrion	78.18	78.18
Bra020305.1-P	Field mustard	cytosol	78.18	78.18
Solyc06g060080.2.1	Tomato	plastid	74.55	74.55
PGSC0003DMT400015500	Potato	mitochondrion	72.73	72.73
PGSC0003DMT400030756	Potato	mitochondrion	72.73	72.73
Solyc11g005050.1.1	Tomato	mitochondrion	72.73	72.73
KRH24848	Soybean	endoplasmic reticulum	87.27	71.64
EES18900	Sorghum	cytosol	70.91	69.64
EER97598	Sorghum	cytosol	70.91	69.64
Zm00001d035637_P001	Maize	mitochondrion	69.09	67.86
TraesCS3D01G537200.1	Wheat	mitochondrion	67.27	67.27
TraesCS3B01G602300.1	Wheat	mitochondrion	67.27	67.27
Zm00001d007011_P001	Maize	cytosol	69.09	66.67
TraesCS1B01G045700.1	Wheat	mitochondrion	69.09	64.41
Os03t0606200-01	Rice	mitochondrion	67.27	63.79
TraesCS7D01G136800.1	Wheat	unclear	67.27	63.79
TraesCS1A01G035800.1	Wheat	golgi	67.27	62.71
GSMUA_Achr2P19100_001	Banana	cytosol	74.55	62.12
TraesCS1D01G037300.1	Wheat	mitochondrion	65.45	61.02
VIT_06s0004g04380.t01	Wine grape	cytosol	50.91	53.85
Zm00001d011055_P001	Maize	mitochondrion	61.82	43.59
KRH23016	Soybean	mitochondrion	76.36	34.71
Zm00001d042952_P001	Maize	cytosol	58.18	22.86
Zm00001d029797_P001	Maize	cytosol	56.36	22.63
HORVU2Hr1G076650.1	Barley	cytosol	61.82	22.22
Zm00001d020144_P001	Maize	mitochondrion	38.18	18.58
Zm00001d039458_P001	Maize	cytosol	54.55	9.12

Protein Annotations

EMBL:ACUP02009133	EnsemblPlants:KRH10301	EnsemblPlantsGene:GLYMA_15G041300	EntrezGene:100306247	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR34565	ProteinID:KRH10301	ProteinID:KRH10301.1	TMHMM:TMhelix	UniParc:UPI000233B49E
UniProt:K7M9H2	MapMan:2.4.6.1.7	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:3239055..3239332

Molecular Weight (calculated)

6567.1 Da

IEP (calculated)

11.148

GRAVY (calculated)

-0.322

Length

55 amino acids

Sequence
(BLAST)

1: MRLFDPWPVF FKREWKRNWP FLVGFAITGT LITKLSLGLS EEEAKKSKFV QAHKR

Best Arabidopsis Sequence Match ( AT5G59613.2 )
(BLAST)

1: MRLFDPWPVF FKREWKRCWP FLTGFAVTGV LITKLTAGLT EEDAKNSKFV QQHRR

Arabidopsis Description

AT3g46430/F18L15_150 [Source:UniProtKB/TrEMBL;Acc:Q9SN96]
SUBAcon: [mitochondrion,extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.