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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 5
  • extracellular 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:plastid
MultiLoc:extracellular
Plant-mPloc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400030756 Potato mitochondrion 94.55 94.55
Solyc11g005050.1.1 Tomato mitochondrion 85.45 85.45
KRH29857 Soybean mitochondrion 78.18 78.18
Zm00001d035637_P001 Maize mitochondrion 76.36 75.0
KRH10301 Soybean mitochondrion 74.55 74.55
Zm00001d007011_P001 Maize cytosol 76.36 73.68
Bra002547.1-P Field mustard mitochondrion 72.73 72.73
Bra006702.1-P Field mustard mitochondrion 72.73 72.73
Bra020305.1-P Field mustard cytosol 72.73 72.73
Os03t0606200-01 Rice mitochondrion 76.36 72.41
EER97598 Sorghum cytosol 72.73 71.43
EES18900 Sorghum cytosol 72.73 71.43
AT5G59613.1 Thale cress cytosol, extracellular, mitochondrion, nucleus 70.91 70.91
AT3G46430.1 Thale cress cytosol, extracellular, mitochondrion, nucleus 70.91 70.91
TraesCS7D01G136800.1 Wheat unclear 74.55 70.69
TraesCS1B01G045700.1 Wheat mitochondrion 74.55 69.49
TraesCS1A01G035800.1 Wheat golgi 72.73 67.8
TraesCS1D01G037300.1 Wheat mitochondrion 72.73 67.8
KRH24848 Soybean endoplasmic reticulum 80.0 65.67
TraesCS3B01G602300.1 Wheat mitochondrion 65.45 65.45
TraesCS3D01G537200.1 Wheat mitochondrion 65.45 65.45
VIT_06s0004g04380.t01 Wine grape cytosol 58.18 61.54
GSMUA_Achr2P19100_001 Banana cytosol 72.73 60.61
Zm00001d011055_P001 Maize mitochondrion 67.27 47.44
KRH23016 Soybean mitochondrion 61.82 28.1
Zm00001d042952_P001 Maize cytosol 63.64 25.0
Zm00001d029797_P001 Maize cytosol 61.82 24.82
HORVU2Hr1G076650.1 Barley cytosol 67.27 24.18
Zm00001d020144_P001 Maize mitochondrion 36.36 17.7
Zm00001d039458_P001 Maize cytosol 61.82 10.33
Protein Annotations
EnsemblPlants:Solyc06g060080.2.1EnsemblPlantsGene:Solyc06g060080.2GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR34565
TMHMM:TMhelixUniParc:UPI0002765F65UniProt:K4C6I9MapMan:2.4.6.1.7::
Description
No Description!
Coordinates
chr6:+:37990325..37995507
Molecular Weight (calculated)
6605.0 Da
IEP (calculated)
11.057
GRAVY (calculated)
-0.498
Length
55 amino acids
Sequence
(BLAST)
1: MRKFDPWPIF FRREWSRNWP FLVGFAVTGT IITKMSLGFT EEDAKNSPFV QKHKK
Best Arabidopsis Sequence Match ( AT5G59613.2 )
(BLAST)
1: MRLFDPWPVF FKREWKRCWP FLTGFAVTGV LITKLTAGLT EEDAKNSKFV QQHRR
Arabidopsis Description
AT3g46430/F18L15_150 [Source:UniProtKB/TrEMBL;Acc:Q9SN96]
SUBAcon: [mitochondrion,extracellular,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.