CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
plasma membrane 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 23027867
plastid: 27992503

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0191500-01
Os01t0739000-01
Os01t0935700-02
Os02t0520800-01
Os03t0606200-01
Os03t0806900-01
Os04t0398500-01
Os05t0301700-01
Os05t0524300-01
Os07t0205000-01
Os08t0246400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	Os01t0191500-01	AT1G51980.1	18189341
ATMG00220.1	Os01t0739000-01	AT1G51980.1	18189341
ATMG00220.1	Os05t0524300-01	AT1G51980.1	18189341
ATMG00220.1	Os01t0935700-02	AT3G27240.1	18189341
ATMG00220.1	Os05t0301700-01	AT3G27240.1	18189341
ATMG00220.1	Os03t0606200-01	AT3G46430.1	18189341
ATMG00220.1	Os03t0806900-01	AT4G32470.1	18189341
ATMG00220.1	Os07t0205000-01	AT4G32470.1	18189341
ATMG00220.1	Os08t0246400-01	AT4G32470.1	18189341
ATMG00220.1	Os02t0520800-01	AT5G13430.1	18189341
ATMG00220.1	Os04t0398500-01	AT5G13430.1	18189341
ATMG00220.1	Os03t0806900-01	AT5G25450.1	18189341
ATMG00220.1	Os07t0205000-01	AT5G25450.1	18189341
ATMG00220.1	Os08t0246400-01	AT5G25450.1	18189341
ATMG00220.1	Os01t0935700-02	AT5G40810.1	18189341
ATMG00220.1	Os05t0301700-01	AT5G40810.1	18189341
ATMG00220.1	Os03t0606200-01	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	96.73	98.97
BAV58143	Barley	mitochondrion, plasma membrane	98.99	98.74
HORVU1Hr1G045710.1	Barley	extracellular	17.88	98.61
TraesCS1B01G413000.1	Wheat	mitochondrion	77.58	98.09
HORVU3Hr1G040840.1	Barley	plasma membrane	84.13	97.95
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	97.48	97.24
TraesCS3A01G188100.1	Wheat	peroxisome, plasma membrane, vacuole	42.82	97.14
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	61.71	96.84
TraesCS2D01G564500.1	Wheat	mitochondrion	93.95	96.63
TraesCS7A01G237900.1	Wheat	mitochondrion	84.89	96.01
TraesCS5A01G430300.1	Wheat	plasma membrane	47.61	95.45
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	92.95	93.89
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	92.95	93.89
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	66.5	92.96
TraesCS7D01G239000.1	Wheat	mitochondrion	87.41	92.29
TraesCS1A01G112900.1	Wheat	mitochondrion	85.89	91.42
HORVU1Hr1G009360.1	Barley	plasma membrane	65.74	87.88
HORVU7Hr1G044370.1	Barley	plasma membrane	63.98	85.52
TraesCS4A01G150300.1	Wheat	mitochondrion, plasma membrane	87.66	83.45
KRH57909	Soybean	mitochondrion	75.57	81.97
Solyc09g050020.1.1	Tomato	nucleus	74.56	81.32
HORVU3Hr1G045040.1	Barley	cytosol	38.54	72.17
GSMUA_AchrUn_...	Banana	plasma membrane	42.82	64.39
VIT_03s0110g00200.t01	Wine grape	cytosol	15.62	42.47
CAA33977	Rice	plasma membrane	12.85	23.72

Protein Annotations

Gene3D:1.20.810.10	MapMan:2.4.3.1	EntrezGene:6450178	ProteinID:AAZ99299.1	ProteinID:AAZ99352.1	EMBL:BA000029
EnsemblPlants:BAC19890	EnsemblPlantsGene:BAC19890	ProteinID:BAC19890	ProteinID:BAC19890.2	ProteinID:CAA37747.1	InterPro:Cyt_b/b6_C
InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Cytochrome_b	EMBL:D83009	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022904	GO:GO:0045275	GO:GO:0046872
GO:GO:0055114	GO:GO:0070469	InterPro:IPR005797	InterPro:IPR005798	InterPro:IPR027387	UniProt:P0C524
PFAM:PF00032	PFAM:PF00033	PIRSF:PIRSF038885	PFscan:PS51002	PFscan:PS51003	PANTHER:PTHR19271
UniProt:Q2F912	UniProt:Q8HCN3	Reactome:R-HSA-611105	SUPFAM:SSF81342	SUPFAM:SSF81648	TMHMM:TMhelix
UniParc:UPI000009ACC5	UniParc:UPI0000128A74	RefSeq:YP_002000585.1	SEG:seg	:	:

Description

cobApocytochrome b

Coordinates

chrMt:-:303848..305041

Molecular Weight (calculated)

44506.7 Da

IEP (calculated)

8.078

GRAVY (calculated)

0.532

Length

397 amino acids

Sequence
(BLAST)

001: MTIRNQRFSL LKQPIYSTLN QHLIDYPTPS NLSYWWGFGS LAGICLVIQI VTGVFLAMHH TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVH
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVP PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPLILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIASYPY FYVKDLVGRV ASAIFFSIWI FFAPNVLGHP DNYIPANPMP TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFISLLA LPFFKEMYVR SSSFRPIHQG IFWLLLADCL LLGWIGCQPV EAPFVTIGQI PSFFFFLFFA ITPIPGRVGR GIPKYYTDET HRTGSVS

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.