Factsheet for GSMUA_AchrUn_randomP10100_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 4
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	mitochondrion, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P13480_001
GSMUA_Achr2P19100_001
GSMUA_Achr3P19600_001
GSMUA_Achr5P17710_001
GSMUA_Achr5P21560_001
GSMUA_Achr7P13650_001
GSMUA_Achr9P00130_001
GSMUA_Achr9P07800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	GSMUA_Achr7P13650_001	AT1G51980.1	18189341
ATMG00220.1	GSMUA_Achr9P00130_001	AT1G51980.1	18189341
ATMG00220.1	GSMUA_Achr5P17710_001	AT3G27240.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT3G27240.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT3G27240.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT3G27240.1	18189341
ATMG00220.1	GSMUA_Achr2P19100_001	AT3G46430.1	18189341
ATMG00220.1	GSMUA_Achr1P13480_001	AT4G32470.1	18189341
ATMG00220.1	GSMUA_Achr9P07800_001	AT4G32470.1	18189341
ATMG00220.1	GSMUA_Achr3P19600_001	AT5G13430.1	18189341
ATMG00220.1	GSMUA_Achr5P21560_001	AT5G13430.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT5G13430.1	18189341
ATMG00220.1	GSMUA_Achr1P13480_001	AT5G25450.1	18189341
ATMG00220.1	GSMUA_Achr9P07800_001	AT5G25450.1	18189341
ATMG00220.1	GSMUA_Achr5P17710_001	AT5G40810.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT5G40810.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT5G40810.1	18189341
ATMG00220.1	GSMUA_AchrUn_...	AT5G40810.1	18189341
ATMG00220.1	GSMUA_Achr2P19100_001	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G502900.1	Wheat	plasma membrane	60.61	82.05
TraesCS2A01G266300.1	Wheat	plasma membrane	58.33	78.97
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	60.98	63.64
HORVU3Hr1G045040.1	Barley	cytosol	49.24	61.32
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	63.64	59.15
HORVU1Hr1G009360.1	Barley	plasma membrane	63.64	56.57
HORVU7Hr1G044370.1	Barley	plasma membrane	62.12	55.22
TraesCS1B01G413000.1	Wheat	mitochondrion	64.02	53.82
HORVU1Hr1G045710.1	Barley	extracellular	13.26	48.61
Solyc09g050020.1.1	Tomato	nucleus	62.12	45.05
TraesCS7D01G239000.1	Wheat	mitochondrion	63.26	44.41
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	65.15	44.33
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	64.39	43.26
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	64.39	43.26
BAV58143	Barley	mitochondrion, plasma membrane	64.77	42.96
BAC19890	Rice	mitochondrion	64.39	42.82
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	64.02	42.46
VIT_03s0110g00200.t01	Wine grape	cytosol	22.73	41.1
TraesCS2D01G564500.1	Wheat	mitochondrion	58.71	40.16
HORVU3Hr1G040840.1	Barley	plasma membrane	45.83	35.48
KRH48941	Soybean	mitochondrion	7.2	11.11
GSMUA_AchrUn_...	Banana	mitochondrion	1.52	4.12

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900
GO:GO:0022904	GO:GO:0045158	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_AchrUn_randomG10100_001	EnsemblPlants:GSMUA_AchrUn_randomP10100_001
EnsemblPlants:GSMUA_AchrUn_randomT10100_001	InterPro:IPR005797	InterPro:IPR005798	InterPro:IPR027387	UniProt:M0U7X0	PFAM:PF00032
PFAM:PF00033	PFscan:PS51002	PFscan:PS51003	PANTHER:PTHR19271	PANTHER:PTHR19271:SF5	SUPFAM:SSF81342
SUPFAM:SSF81648	TMHMM:TMhelix	UniParc:UPI000296A0EE	SEG:seg	:	:

Description

Cytochrome b [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10100_001]

Coordinates

chrchrUn_random:+:48401967..48409552

Molecular Weight (calculated)

29914.2 Da

IEP (calculated)

9.771

GRAVY (calculated)

0.532

Length

264 amino acids

Sequence
(BLAST)

001: MTLRNQRFSI LKQPIPSTLN QHFINYPTPS NISYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVH
101: LHIFRGLYYA SYCSPREFVR CLGVVIFLLM IVTAFIGYVP PWGQMSFWGA TVITSLASAI PVVGDTIYTR QIRSSSFRPI HQGIFWLLLA DRLILGWIGC
201: KPVEAPFVTI GQIPSFLFFL FFAITPILGR LWLLLLLIHS HPKSCARELT NTQANKPLMS PTKS

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.