Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 7
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0110g00200.t01 | Wine grape | cytosol | 12.28 | 14.38 |
| TraesCS5A01G502900.1 | Wheat | plasma membrane | 9.94 | 8.72 |
| TraesCS2A01G266300.1 | Wheat | plasma membrane | 9.36 | 8.21 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 11.11 | 7.2 |
| KRH57909 | Soybean | mitochondrion | 9.94 | 4.64 |
| KRH75043 | Soybean | endoplasmic reticulum, mitochondrion, plastid, vacuole | 1.75 | 2.59 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:35.1 | EMBL:ACUP02004316 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf | InterPro:Cytb/b6-like_sf |
| EnsemblPlantsGene:GLYMA_07G122200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 |
| GO:GO:0022900 | GO:GO:0055114 | InterPro:IPR005798 | InterPro:IPR027387 | UniProt:K7L111 | EnsemblPlants:KRH48941 |
| ProteinID:KRH48941 | ProteinID:KRH48941.1 | PFAM:PF00032 | PFscan:PS51003 | PANTHER:PTHR19271 | SUPFAM:SSF81648 |
| TMHMM:TMhelix | UniParc:UPI0002957997 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:14308297..14308812
Molecular Weight (calculated)
19447.0 Da
IEP (calculated)
7.566
GRAVY (calculated)
0.609
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQISFYPYF YVKDLVGWVA FAIFFSIWIF YAPNVLGHPD NYIPANLMPT PPHIVSEWYF LLIHAILRSI LDKSGGVAPI APVFICVLAL PFFKSMYVRS
101: SSFRPIHQGI FWLLLADRLL LGWIGCQPVE APFVTIGQIP PFVFFLFFAI TPIPGRVGRG IPNSYTDETD Q
101: SSFRPIHQGI FWLLLADRLL LGWIGCQPVE APFVTIGQIP PFVFFLFFAI TPIPGRVGRG IPNSYTDETD Q
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Arabidopsis Description
Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.