Factsheet for VIT_03s0110g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2
plasma membrane 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0150g00160.t01
VIT_04s0008g05000.t01
VIT_06s0004g04380.t01
VIT_09s0002g03200.t01
VIT_14s0068g01030.t01
VIT_14s0171g00330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	VIT_09s0002g03200.t01	AT1G51980.1	18189341
ATMG00220.1	VIT_14s0171g00330.t01	AT3G27240.1	18189341
ATMG00220.1	VIT_06s0004g04380.t01	AT3G46430.1	18189341
ATMG00220.1	VIT_01s0150g00160.t01	AT5G13430.1	18189341
ATMG00220.1	VIT_14s0068g01030.t01	AT5G13430.1	18189341
ATMG00220.1	VIT_04s0008g05000.t01	AT5G25450.1	18189341
ATMG00220.1	VIT_14s0171g00330.t01	AT5G40810.1	18189341
ATMG00220.1	VIT_06s0004g04380.t01	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G502900.1	Wheat	plasma membrane	43.15	32.31
TraesCS2A01G266300.1	Wheat	plasma membrane	41.78	31.28
HORVU3Hr1G045040.1	Barley	cytosol	37.67	25.94
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	40.41	23.32
GSMUA_AchrUn_...	Banana	plasma membrane	41.1	22.73
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	42.47	21.83
HORVU1Hr1G009360.1	Barley	plasma membrane	42.47	20.88
HORVU7Hr1G044370.1	Barley	plasma membrane	41.78	20.54
TraesCS1B01G413000.1	Wheat	mitochondrion	42.47	19.75
HORVU3Hr1G040840.1	Barley	plasma membrane	42.47	18.18
Solyc09g050020.1.1	Tomato	nucleus	41.1	16.48
TraesCS7D01G239000.1	Wheat	mitochondrion	41.78	16.22
TraesCS2D01G564500.1	Wheat	mitochondrion	42.47	16.06
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	41.78	15.72
BAC19890	Rice	mitochondrion	42.47	15.62
BAV58143	Barley	mitochondrion, plasma membrane	42.47	15.58
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	41.78	15.33
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	41.1	15.27
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	41.1	15.27
KRH48941	Soybean	mitochondrion	14.38	12.28
HORVU1Hr1G045710.1	Barley	extracellular	4.11	8.33

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	ProteinID:CBI32936	ProteinID:CBI32936.3	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
UniProt:D7TR13	InterPro:Di-haem_cyt_TM	EMBL:FN596010	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139	GO:GO:0006810	GO:GO:0008121
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0022904	GO:GO:0045275	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469
GO:GO:1902600	InterPro:IPR005797	InterPro:IPR027387	PFAM:PF00033	PFscan:PS51002	PANTHER:PTHR19271
SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI0001BE3B01	ArrayExpress:VIT_03s0110g00200	EnsemblPlantsGene:VIT_03s0110g00200	EnsemblPlants:VIT_03s0110g00200.t01

Description

No Description!

Coordinates

chr3:-:12951250..12952503

Molecular Weight (calculated)

17702.8 Da

IEP (calculated)

8.455

GRAVY (calculated)

0.551

Length

146 amino acids

Sequence
(BLAST)

001: MHHTPHVDLA FNLVEHITRY VERGWLLRYM HANGASMFLI LVHLHIFRGL YHASYNNLKE FVYLHHLLSF VLLDKISFYP YCFVKNLVGQ VAYVIFSFIW
101: IFYAPNHQFL YACWLYIFLK VCMCVVQVFD QFIKEYFSCF SRIAYY

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.