Factsheet for HORVU3Hr1G040840.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075540.3
HORVU2Hr1G071350.1
HORVU2Hr1G076650.1
HORVU3Hr1G019540.2
HORVU3Hr1G098650.1
HORVU5Hr1G109620.2
HORVU6Hr1G051210.7
HORVU7Hr1G058850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	HORVU1Hr1G075540.3	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G019540.2	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT3G27240.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT3G27240.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT3G46430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT4G32470.1	18189341
ATMG00220.1	HORVU2Hr1G071350.1	AT5G13430.1	18189341
ATMG00220.1	HORVU6Hr1G051210.7	AT5G13430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT5G25450.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT5G40810.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT5G40810.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G045710.1	Barley	extracellular	20.82	98.61
BAV58143	Barley	mitochondrion, plasma membrane	99.41	85.18
BAC19890	Rice	mitochondrion	97.95	84.13
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	94.72	83.25
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	91.79	79.64
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	91.79	79.64
KRH57909	Soybean	mitochondrion	81.52	75.96
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	55.13	74.31
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	60.7	72.89
HORVU1Hr1G009360.1	Barley	plasma membrane	59.82	68.69
HORVU7Hr1G044370.1	Barley	plasma membrane	58.65	67.34
Solyc09g050020.1.1	Tomato	nucleus	70.97	66.48
HORVU3Hr1G045040.1	Barley	cytosol	33.14	53.3
GSMUA_AchrUn_...	Banana	plasma membrane	35.48	45.83
VIT_03s0110g00200.t01	Wine grape	cytosol	18.18	42.47
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	13.2	19.4
AGP50784	Barley	plastid	13.2	19.4
HORVU6Hr1G049420.1	Barley	mitochondrion	13.2	19.4
HORVU2Hr1G062090.1	Barley	plasma membrane	12.61	18.53
HORVU1Hr1G063040.1	Barley	plastid	9.09	18.02
HORVU7Hr1G052180.1	Barley	plastid	9.09	18.02
HORVU0Hr1G037920.1	Barley	plasma membrane	9.09	17.13
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	5.87	16.0
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	3.23	7.91
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	3.23	7.91

Protein Annotations

Gene3D:1.20.810.10	MapMan:2.4.3.1	UniProt:A0A287KV39	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b/b6_N
InterPro:Cytb/b6-like_sf	InterPro:Cytochrome_b	InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091
GO:GO:0006122	GO:GO:0006139	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022904
GO:GO:0045275	GO:GO:0070469	GO:GO:1902600	EnsemblPlantsGene:HORVU3Hr1G040840	EnsemblPlants:HORVU3Hr1G040840.1	InterPro:IPR005797
InterPro:IPR005798	InterPro:IPR027387	PFAM:PF00032	PFAM:PF00033	PIRSF:PIRSF038885	PFscan:PS51002
PFscan:PS51003	PANTHER:PTHR19271	SUPFAM:SSF81342	SUPFAM:SSF81648	TMHMM:TMhelix	UniParc:UPI000B47EC28
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:252302075..252303270

Molecular Weight (calculated)

38100.9 Da

IEP (calculated)

7.564

GRAVY (calculated)

0.526

Length

341 amino acids

Sequence
(BLAST)

001: MHHTPHVDLA FNSVEHIMRD VEGGWLLRYM HANGASMFLI VVHLHIFRGL YHASYSSPRE FVRCLGVVIF LLMIVTAFIG YVPPWGQMSF WGATVITSLA
101: SAIPVVGDTI VTWLWGGFSV DNATLNRFFS LHHLLPLILV GASLLHLAAL HQYGSNNPLG VHSEMDKIAP YPYFYVKDLV GRVASAIFFS IWIFFAPNVL
201: GHPDNYIPAN PMPTPPHIVP EWYFLPIHAI LRSIPDKAGG VAAIAPVFIS LLALPFFKEM YVRSSSFRPI HQGIFWLLLA DCLLLGWIGC QPMEAPFVTI
301: GQIPSVFFFL FFAITPIPGR VGRGIPKYYT DETHRTGSLD G

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.