Factsheet for HORVU0Hr1G037920.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	secretory
TargetP:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	48.07	69.6
ATCG00720.1	Thale cress	plasma membrane	78.45	66.05
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	31.49	65.52
HORVU6Hr1G049420.1	Barley	mitochondrion	79.56	62.07
AGP50784	Barley	plastid	79.56	62.07
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	79.01	61.64
HORVU2Hr1G062090.1	Barley	plasma membrane	76.8	59.91
TraesCS5D01G009100.1	Wheat	golgi, plastid, vacuole	28.18	54.84
HORVU1Hr1G063040.1	Barley	plastid	45.3	47.67
HORVU7Hr1G052180.1	Barley	plastid	45.3	47.67
CDX71257	Canola	cytosol, plastid, vacuole	22.1	40.82
GSMUA_AchrUn_...	Banana	mitochondrion	18.78	35.05
HORVU1Hr1G045710.1	Barley	extracellular	8.29	20.83
HORVU3Hr1G045040.1	Barley	cytosol	18.23	15.57
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	18.78	13.44
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	19.89	12.68
HORVU1Hr1G009360.1	Barley	plasma membrane	19.89	12.12
HORVU7Hr1G044370.1	Barley	plasma membrane	19.34	11.78
HORVU3Hr1G040840.1	Barley	plasma membrane	17.13	9.09
BAV58143	Barley	mitochondrion, plasma membrane	19.89	9.05
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	5.52	7.19
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	5.52	7.19

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	UniProt:A0A287EC14	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
EnsemblPlantsGene:HORVU0Hr1G037920	EnsemblPlants:HORVU0Hr1G037920.1	InterPro:IPR005797	InterPro:IPR027387	PFAM:PF00033	PIRSF:PIRSF000032
PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI000B47A99E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:238627108..238628806

Molecular Weight (calculated)

18540.9 Da

IEP (calculated)

8.589

GRAVY (calculated)

0.596

Length

181 amino acids

Sequence
(BLAST)

001: MGGGVNIFYC LGGITLTCFL VQVATGFAMT FYYRPTVTEA FSSVQYIMTE ANFGWLIRSV HRWSASMMVL MMILHVFRVY LTGGFKKPRE LTWVTGVVLA
101: VLTASFGVTG YSLPWDQIGY WAVKIVTGVP DAIPVIGSPL VELLRGSXXX XXXXXXXXXX TYLCTASAYC RIYVNALSND T

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.