Factsheet for HORVU1Hr1G063040.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G052180.1	Barley	plastid	100.0	100.0
CDX71257	Canola	cytosol, plastid, vacuole	46.51	81.63
ATCG00720.1	Thale cress	plasma membrane	70.35	56.28
HORVU6Hr1G049420.1	Barley	mitochondrion	72.09	53.45
AGP50784	Barley	plastid	72.09	53.45
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	71.51	53.02
HORVU2Hr1G062090.1	Barley	plasma membrane	69.19	51.29
HORVU0Hr1G037920.1	Barley	plasma membrane	47.67	45.3
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	29.65	40.8
HORVU1Hr1G045710.1	Barley	extracellular	15.12	36.11
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	9.88	12.23
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	9.88	12.23
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	17.44	11.86
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	18.02	10.92
HORVU1Hr1G009360.1	Barley	plasma membrane	18.02	10.44
HORVU7Hr1G044370.1	Barley	plasma membrane	18.02	10.44
HORVU3Hr1G045040.1	Barley	cytosol	12.79	10.38
HORVU3Hr1G040840.1	Barley	plasma membrane	18.02	9.09
BAV58143	Barley	mitochondrion, plasma membrane	18.02	7.79

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	UniProt:A0A287WHJ4	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
EnsemblPlantsGene:HORVU1Hr1G063040	EnsemblPlants:HORVU1Hr1G063040.1	InterPro:IPR005797	InterPro:IPR027387	PFAM:PF00033	PIRSF:PIRSF000032
PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI000B47C33A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:453168547..453169208

Molecular Weight (calculated)

16012.9 Da

IEP (calculated)

10.809

GRAVY (calculated)

0.470

Length

172 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXSTTS TTFSNASAVR STRRTQKFLW AVMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLPWDQI
101: GYWAVKIVTG VPDAIPVIGS PLVELLCGSA SVGQSTLTRF YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.