CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075540.3
HORVU2Hr1G071350.1
HORVU2Hr1G076650.1
HORVU3Hr1G019540.2
HORVU3Hr1G098650.1
HORVU5Hr1G109620.2
HORVU6Hr1G051210.7
HORVU7Hr1G058850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	HORVU1Hr1G075540.3	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G019540.2	AT1G51980.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT3G27240.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT3G27240.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT3G46430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT4G32470.1	18189341
ATMG00220.1	HORVU2Hr1G071350.1	AT5G13430.1	18189341
ATMG00220.1	HORVU6Hr1G051210.7	AT5G13430.1	18189341
ATMG00220.1	HORVU5Hr1G109620.2	AT5G25450.1	18189341
ATMG00220.1	HORVU3Hr1G098650.1	AT5G40810.1	18189341
ATMG00220.1	HORVU7Hr1G058850.1	AT5G40810.1	18189341
ATMG00220.1	HORVU2Hr1G076650.1	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G040840.1	Barley	plasma membrane	85.18	99.41
BAC19890	Rice	mitochondrion	98.74	98.99
HORVU1Hr1G045710.1	Barley	extracellular	17.84	98.61
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	95.98	98.45
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	61.81	97.23
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	92.46	93.64
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	92.46	93.64
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	66.58	93.31
HORVU1Hr1G009360.1	Barley	plasma membrane	65.83	88.22
HORVU7Hr1G044370.1	Barley	plasma membrane	64.07	85.86
KRH57909	Soybean	mitochondrion	75.38	81.97
Solyc09g050020.1.1	Tomato	nucleus	74.62	81.59
HORVU3Hr1G045040.1	Barley	cytosol	38.19	71.7
GSMUA_AchrUn_...	Banana	plasma membrane	42.96	64.77
VIT_03s0110g00200.t01	Wine grape	cytosol	15.58	42.47
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	12.81	21.98
HORVU6Hr1G049420.1	Barley	mitochondrion	12.81	21.98
AGP50784	Barley	plastid	12.81	21.98
HORVU2Hr1G062090.1	Barley	plasma membrane	12.06	20.69
HORVU0Hr1G037920.1	Barley	plasma membrane	9.05	19.89
HORVU1Hr1G063040.1	Barley	plastid	7.79	18.02
HORVU7Hr1G052180.1	Barley	plastid	7.79	18.02
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	5.03	16.0
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	2.76	7.91
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	2.76	7.91

Protein Annotations

Gene3D:1.20.810.10	MapMan:2.4.3.1	ENA:AP017301.1:CDS:complement(240852..242048)	EnsemblPlants:BAV58143	ProteinID:BAV58143	ProteinID:BAV58143.1
InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Cytochrome_b	InterPro:Di-haem_cyt_TM
EnsemblPlantsGene:EPlHVUG00000039853	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0006122	GO:GO:0006139	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022904	GO:GO:0045275
GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR005797	InterPro:IPR005798	InterPro:IPR027387
GO:M0X9J5	UniProt:M0X9J5	PFAM:PF00032	PFAM:PF00033	PIRSF:PIRSF038885	PFscan:PS51002
PFscan:PS51003	PANTHER:PTHR19271	SUPFAM:SSF81342	SUPFAM:SSF81648	TMHMM:TMhelix	UniParc:UPI00029619EE
SEG:seg	:	:	:	:	:

Description

cobapocytochrome b

Coordinates

chrMt:-:240852..242048

Molecular Weight (calculated)

44527.7 Da

IEP (calculated)

8.078

GRAVY (calculated)

0.517

Length

398 amino acids

Sequence
(BLAST)

001: MTIRNQRFSL LKQPIYSTLN QHLIDYPTPS NLSYWWGFGS LAGICLVIQI VTGVFLAMHH TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVH
101: LHIFRGLYHA SYSSPREFVR CLGVVIFLLM IVTAFIGYVP PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPLILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIASYPY FYVKDLVGRV ASAIFFSIWI FFAPNVLGHP DNYIPANPMP TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFISLLA LPFFKEMYVR SSSFRPIHQG IFWLLLADCL LLGWIGCQPV EAPFVTIGQI PSVFFFLFFA ITPIPGRVGR GIPKYYTDET HRTGSLDG

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.