Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G07727.1 | Thale cress | mitochondrion, plasma membrane | 100.0 | 100.0 |
| HORVU1Hr1G045710.1 | Barley | extracellular | 17.56 | 95.83 |
| GRMZM5G884707_P01 | Maize | mitochondrion, plasma membrane | 93.13 | 94.33 |
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 41.98 | 94.29 |
| TraesCS1B01G413000.1 | Wheat | mitochondrion | 75.06 | 93.95 |
| BAC19890 | Rice | mitochondrion | 93.89 | 92.95 |
| TraesCS5A01G430300.1 | Wheat | plasma membrane | 46.82 | 92.93 |
| HORVU5Hr1G072320.1 | Barley | golgi, mitochondrion, plasma membrane | 59.54 | 92.49 |
| BAV58143 | Barley | mitochondrion, plasma membrane | 93.64 | 92.46 |
| HORVU3Hr1G040840.1 | Barley | plasma membrane | 79.64 | 91.79 |
| TraesCS7A01G237900.1 | Wheat | mitochondrion | 81.93 | 91.74 |
| TraesCS4D01G140500.1 | Wheat | mitochondrion, plasma membrane | 92.11 | 90.95 |
| TraesCS2D01G564500.1 | Wheat | mitochondrion | 88.55 | 90.16 |
| HORVU0Hr1G034150.1 | Barley | golgi, mitochondrion, plasma membrane | 64.38 | 89.08 |
| TraesCS7D01G239000.1 | Wheat | mitochondrion | 84.48 | 88.3 |
| TraesCS1A01G112900.1 | Wheat | mitochondrion | 81.42 | 85.79 |
| HORVU1Hr1G009360.1 | Barley | plasma membrane | 63.61 | 84.18 |
| KRH57909 | Soybean | mitochondrion | 78.12 | 83.88 |
| Solyc09g050020.1.1 | Tomato | nucleus | 77.35 | 83.52 |
| HORVU7Hr1G044370.1 | Barley | plasma membrane | 62.09 | 82.15 |
| TraesCS4A01G150300.1 | Wheat | mitochondrion, plasma membrane | 83.97 | 79.14 |
| HORVU3Hr1G045040.1 | Barley | cytosol | 37.4 | 69.34 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 43.26 | 64.39 |
| VIT_03s0110g00200.t01 | Wine grape | cytosol | 15.27 | 41.1 |
| ATCG00720.1 | Thale cress | plasma membrane | 12.98 | 23.72 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:2.4.3.1 | UniProt:A0A2P2CLG2 | ArrayExpress:ATMG00220 | EnsemblPlantsGene:ATMG00220 | RefSeq:ATMG00220 |
| TAIR:ATMG00220 | RefSeq:ATMG00220-TAIR-G | EnsemblPlants:ATMG00220.1 | TAIR:ATMG00220.1 | Symbol:COB | InterPro:Cyt_b/b6_C |
| InterPro:Cyt_b/b6_C_sf | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Cytochrome_b | ProteinID:DAB41506.1 | InterPro:Di-haem_cyt_TM |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006091 | GO:GO:0006122 |
| GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008121 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0022904 | GO:GO:0045275 |
| GO:GO:0046872 | GO:GO:0055114 | GO:GO:0070469 | GO:GO:1902600 | InterPro:IPR005797 | InterPro:IPR005798 |
| InterPro:IPR027387 | PFAM:PF00032 | PFAM:PF00033 | PIRSF:PIRSF038885 | PFscan:PS51002 | PFscan:PS51003 |
| PANTHER:PTHR19271 | PANTHER:PTHR19271:SF5 | SUPFAM:SSF81342 | SUPFAM:SSF81648 | TMHMM:TMhelix | UniParc:UPI00001622FD |
| SEG:seg | : | : | : | : | : |
Description
COBapocytochrome b [Source:TAIR;Acc:ATMG00220]
Coordinates
chrMt:+:60235..61416
Molecular Weight (calculated)
44149.3 Da
IEP (calculated)
7.293
GRAVY (calculated)
0.604
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.