Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 43.52 | 96.0 |
| TraesCS4D01G140500.1 | Wheat | mitochondrion, plasma membrane | 96.89 | 93.97 |
| BAC19890 | Rice | mitochondrion | 96.63 | 93.95 |
| GRMZM5G884707_P01 | Maize | mitochondrion, plasma membrane | 94.04 | 93.56 |
| TraesCS1B01G413000.1 | Wheat | mitochondrion | 75.13 | 92.36 |
| HORVU5Hr1G072320.1 | Barley | golgi, mitochondrion, plasma membrane | 59.59 | 90.91 |
| ATMG00220.1 | Thale cress | mitochondrion, plasma membrane | 90.16 | 88.55 |
| AT2G07727.1 | Thale cress | mitochondrion, plasma membrane | 90.16 | 88.55 |
| TraesCS7D01G239000.1 | Wheat | mitochondrion | 86.01 | 88.3 |
| HORVU1Hr1G009360.1 | Barley | plasma membrane | 63.47 | 82.49 |
| KRH57909 | Soybean | mitochondrion | 74.61 | 78.69 |
| Solyc09g050020.1.1 | Tomato | nucleus | 72.02 | 76.37 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 40.16 | 58.71 |
| VIT_03s0110g00200.t01 | Wine grape | cytosol | 16.06 | 42.47 |
| TraesCS5D01G221600.1 | Wheat | plasma membrane | 11.66 | 19.82 |
| TraesCS1D01G183000.1 | Wheat | plastid | 11.66 | 19.4 |
| TraesCS5D01G009100.1 | Wheat | golgi, plastid, vacuole | 3.37 | 13.98 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:2.4.3.1 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf |
| InterPro:Cytochrome_b | InterPro:Di-haem_cyt_TM | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006139 | GO:GO:0008121 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0022904 | GO:GO:0045275 | InterPro:IPR005797 | InterPro:IPR005798 | InterPro:IPR027387 | PFAM:PF00032 |
| PFAM:PF00033 | PIRSF:PIRSF038885 | PFscan:PS51002 | PFscan:PS51003 | PANTHER:PTHR19271 | SUPFAM:SSF81342 |
| SUPFAM:SSF81648 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2D01G564500 | EnsemblPlants:TraesCS2D01G564500.1 | TIGR:cd00284 | TIGR:cd00290 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:635020107..635021302
Molecular Weight (calculated)
43249.0 Da
IEP (calculated)
8.272
GRAVY (calculated)
0.452
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIRNQRFSL LKQPIYSTLN QHLIDYPTPS NLSYWWGFGS LAGISMHHTP HVDLAFNSVE HIMRDVEGGW LLRYMHANGA SMFLIVVHLH IFRGLYHASY
101: SSPREFVRYL GVVIFILMIV TAFIGYVPPW GQMSFWGATV ITSLASTIPV VGDTIVTWLW GGFSVDNATL NRFFSLHHLL PLILVGASLL HLAALHQYGS
201: NNPLGVHSEM DKIASYPYFY VKDLVGRVAS AIFFSIWIFF APNVLGHPDN HIPANPMPTP PSIVPEWYFL PIHAILRSIP DKAGGVAAIA PVFISLLALP
301: FLKEMYVRSS SFRPIHQGIF WLLLADCLLL GWIGCQPVEA PFVTIGQIPS VFFFLFFAIT PIPGRVGRGI PKYYTDETHR IGSLDG
101: SSPREFVRYL GVVIFILMIV TAFIGYVPPW GQMSFWGATV ITSLASTIPV VGDTIVTWLW GGFSVDNATL NRFFSLHHLL PLILVGASLL HLAALHQYGS
201: NNPLGVHSEM DKIASYPYFY VKDLVGRVAS AIFFSIWIFF APNVLGHPDN HIPANPMPTP PSIVPEWYFL PIHAILRSIP DKAGGVAAIA PVFISLLALP
301: FLKEMYVRSS SFRPIHQGIF WLLLADCLLL GWIGCQPVEA PFVTIGQIPS VFFFLFFAIT PIPGRVGRGI PKYYTDETHR IGSLDG
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Arabidopsis Description
Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.