Factsheet for TraesCS3A01G107500.3

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G109500.1	Wheat	plastid	98.22	89.21
HORVU3Hr1G019540.2	Barley	plasma membrane	95.45	89.09
TraesCS3B01G126300.1	Wheat	plastid	97.43	88.81
Os01t0191500-01	Rice	mitochondrion	82.57	82.57
KXG31644	Sorghum	mitochondrion	80.0	80.0
Zm00001d039505_P001	Maize	mitochondrion	79.8	79.8
VIT_09s0002g03200.t01	Wine grape	mitochondrion	60.99	60.87
KRH41465	Soybean	mitochondrion	42.57	60.06
KRH44259	Soybean	mitochondrion	59.8	59.8
KRH23379	Soybean	endoplasmic reticulum	57.82	59.47
KRH09954	Soybean	mitochondrion	57.82	59.47
KRH47194	Soybean	mitochondrion	59.21	59.21
VIT_11s0016g02870.t01	Wine grape	mitochondrion	59.21	59.09
KRH60182	Soybean	nucleus	59.21	58.51
KRH41466	Soybean	cytosol, mitochondrion	17.23	58.0
Bra014305.1-P	Field mustard	mitochondrion	55.64	55.98
Solyc12g008630.1.1	Tomato	plastid	55.84	55.95
CDY46536	Canola	mitochondrion	55.25	55.58
CDY33843	Canola	mitochondrion	55.05	55.38
CDY22877	Canola	mitochondrion	55.25	55.36
PGSC0003DMT400000784	Potato	mitochondrion	55.05	55.16
Bra030405.1-P	Field mustard	mitochondrion	55.05	55.16
Bra018939.1-P	Field mustard	mitochondrion	55.25	55.14
CDY45641	Canola	mitochondrion	54.85	54.96
CDX87868	Canola	mitochondrion	54.85	54.96
CDY53441	Canola	mitochondrion	54.46	54.78
AT3G16480.1	Thale cress	mitochondrion	53.66	54.31
AT1G51980.1	Thale cress	mitochondrion	53.07	53.28
CDX92075	Canola	mitochondrion	50.49	51.52
Bra022162.1-P	Field mustard	mitochondrion	50.3	51.31
CDY43102	Canola	mitochondrion	50.1	51.21
TraesCS3A01G277600.1	Wheat	mitochondrion	56.63	50.62
Solyc05g026150.1.1	Tomato	cytosol, extracellular, mitochondrion	15.64	48.47
CDY06399	Canola	mitochondrion	22.77	48.32
KRG99915	Soybean	cytosol	8.71	47.31
KRH45936	Soybean	cytosol, mitochondrion, plastid	6.73	44.74
TraesCS3A01G516600.1	Wheat	mitochondrion	44.55	44.64
KRH38482	Soybean	cytosol, plastid	6.93	39.77
KRH15783	Soybean	cytosol	27.72	39.22
TraesCS4A01G056200.2	Wheat	mitochondrion	25.15	23.96
TraesCS3A01G250400.1	Wheat	mitochondrion	23.37	23.46

Protein Annotations

EnsemblPlants:TraesCS3A01G107500.3	EnsemblPlantsGene:TraesCS3A01G107500	Gene3D:3.30.830.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0046872	InterPro:Metalloenz_LuxS/M16	InterPro:Pept_M16_N	InterPro:Peptidase_M16_C	PANTHER:PTHR11851	PANTHER:PTHR11851:SF138
PFAM:PF00675	PFAM:PF05193	SEG:seg	SUPFAM:SSF63411	MapMan:2.4.3.3.1	MapMan:18.10.2.2.1

Description

No Description!

Coordinates

chr3A:+:72413146..72417558

Molecular Weight (calculated)

53439.7 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.045

Length

505 amino acids

Sequence
(BLAST)

001: MYRAASGLGA LKQHGADTQL LNIAVRSAST SVAQRSSGGF LGWLTGARSN ALPPPDFALP GVTIPPPLAD HVEPGKTKIT TLSNGVKIAS ETSPGSACSV
101: GVYVHCGSVY ETPETLGATQ LLKKLAFTTT RNRSQLRVVR EIGAIGGSAK ASANRELMSY SYGALKTYMP EMVEVLVDCV RNPALLDWEV KEEIMNLKAE
201: LAEASSNPET FLLDALHSSG YSGALANPLI ASEASISRLN TDVLEEFLAL NYTSPRIVLA ASGVDHDELV SIAEPLLSDI PTATGTGKPK SVYVGGEYRR
301: AADSSNTDLA LAFELPGGWL KEKEFATASV LQALLGGGGV FTWGRPGKGL HSRLNPLVNE FDQIKSISAF KNVHSNTGIF GIHTSTEAAF VPKVIDLAAR
401: ELTSLATPGQ VDQTQLERAK AFAKSAILKN LESKASTTED MGRQALAFGE RKPVEQLLKA VDAITLADVS TVAEKIISSP LTMASHGNVL NVPAYETVRG
501: KFSSK

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.