Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 9
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
plastid: 22908117 plastid: 26371478 unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400000784 | Potato | mitochondrion | 97.62 | 97.62 |
VIT_11s0016g02870.t01 | Wine grape | mitochondrion | 77.18 | 76.88 |
GSMUA_Achr9P00130_001 | Banana | mitochondrion | 73.02 | 73.6 |
KRH41466 | Soybean | cytosol, mitochondrion | 21.83 | 73.33 |
KRH60182 | Soybean | nucleus | 72.22 | 71.23 |
KRH41465 | Soybean | mitochondrion | 50.6 | 71.23 |
GSMUA_Achr7P13650_001 | Banana | mitochondrion | 70.63 | 70.22 |
Solyc05g026150.1.1 | Tomato | cytosol, extracellular, mitochondrion | 22.42 | 69.33 |
Zm00001d025260_P001 | Maize | mitochondrion | 28.37 | 69.08 |
Os01t0739000-01 | Rice | mitochondrion | 67.86 | 68.54 |
TraesCS1D01G346100.1 | Wheat | mitochondrion | 66.87 | 67.54 |
TraesCS1B01G356900.1 | Wheat | golgi | 66.67 | 67.33 |
Os05t0524300-01 | Rice | mitochondrion, plastid | 64.09 | 65.38 |
HORVU1Hr1G075540.3 | Barley | mitochondrion | 66.67 | 62.57 |
TraesCS3B01G311800.1 | Wheat | mitochondrion | 61.9 | 62.53 |
Zm00001d038776_P001 | Maize | mitochondrion | 64.88 | 61.93 |
TraesCS3D01G277900.1 | Wheat | mitochondrion | 61.31 | 61.92 |
KRG99915 | Soybean | cytosol | 10.71 | 58.06 |
Os01t0191500-01 | Rice | mitochondrion | 56.94 | 56.83 |
KXG31644 | Sorghum | mitochondrion | 56.55 | 56.44 |
Zm00001d039505_P001 | Maize | mitochondrion | 56.35 | 56.24 |
TraesCS3A01G107500.3 | Wheat | golgi, nucleus | 55.95 | 55.84 |
TraesCS3A01G277600.1 | Wheat | mitochondrion | 61.71 | 55.04 |
HORVU3Hr1G019540.2 | Barley | plasma membrane | 55.16 | 51.39 |
TraesCS3D01G109500.1 | Wheat | plastid | 56.15 | 50.9 |
TraesCS3B01G126300.1 | Wheat | plastid | 55.36 | 50.36 |
KRH15783 | Soybean | cytosol | 32.14 | 45.38 |
Solyc05g012480.2.1 | Tomato | plastid | 26.59 | 25.14 |
Solyc02g088700.2.1 | Tomato | plastid | 25.0 | 23.68 |
Protein Annotations
MapMan:18.10.2.2.1 | MapMan:2.4.3.3.1 | Gene3D:3.30.830.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004222 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
GO:GO:0005743 | GO:GO:0006508 | GO:GO:0006627 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0008270 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0019538 |
GO:GO:0046872 | UniProt:K4DBV1 | MEROPS:M16.985 | InterPro:Metalloenz_LuxS/M16 | PFAM:PF00675 | PFAM:PF05193 |
ScanProsite:PS00143 | PANTHER:PTHR11851 | PANTHER:PTHR11851:SF157 | InterPro:Pept_M16_N | InterPro:Pept_M16_Zn_BS | InterPro:Peptidase_M16_C |
SUPFAM:SSF63411 | EnsemblPlantsGene:Solyc12g008630.1 | EnsemblPlants:Solyc12g008630.1.1 | UniParc:UPI0002769576 | SEG:seg | : |
Description
No Description!
Coordinates
chr12:-:2007849..2015328
Molecular Weight (calculated)
54678.4 Da
IEP (calculated)
6.435
GRAVY (calculated)
-0.081
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRCVSSRLS SLKARQGNRV LTRFSSSAAV ATKPSGGLFS WITGDTSSSV TPLDFPLNDV KLSPPLPDYV EPAKTRITTL ANGVKVASEA SVNPAASIGL
101: YVDCGSIYET PVSYGATHLL ERMAFKSTLN RSHLRIVREI EAIGGNVTAS ASREHMIYTY DALKTYVPQM VEMLVDCVRN PAFLDWEVKE QLEKVKAEIS
201: EYSKNPQHLL LEAVHSAGYA GPYGNSLMAT EATINRLNST VLEEFVAANY TAPRMVLAAS GVEHEEFLKV AEPLLSDLPK VSATEEPKPV YVGGDYRCQA
301: DAEMTHFALA FEVPGGWMSE KESMTLTVLQ MLMGGGGSFS AGGPGKGMYS RLYLRVLNQY PQIHAFSAFS SIYNNTGLFG IQGTTGSDFG PQAVDVAVKE
401: LIAVANPSEV DQVQLNRAKQ ATKSAILMNL ESRMVASEDI GRQLLTYGER KPVEHFLKAI DAVSAKDIAS VVQKLISSPL TMASYGDVLS LPSYDAVSSR
501: FRSK
101: YVDCGSIYET PVSYGATHLL ERMAFKSTLN RSHLRIVREI EAIGGNVTAS ASREHMIYTY DALKTYVPQM VEMLVDCVRN PAFLDWEVKE QLEKVKAEIS
201: EYSKNPQHLL LEAVHSAGYA GPYGNSLMAT EATINRLNST VLEEFVAANY TAPRMVLAAS GVEHEEFLKV AEPLLSDLPK VSATEEPKPV YVGGDYRCQA
301: DAEMTHFALA FEVPGGWMSE KESMTLTVLQ MLMGGGGSFS AGGPGKGMYS RLYLRVLNQY PQIHAFSAFS SIYNNTGLFG IQGTTGSDFG PQAVDVAVKE
401: LIAVANPSEV DQVQLNRAKQ ATKSAILMNL ESRMVASEDI GRQLLTYGER KPVEHFLKAI DAVSAKDIAS VVQKLISSPL TMASYGDVLS LPSYDAVSSR
501: FRSK
001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR
Arabidopsis Description
Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.