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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000784 Potato mitochondrion 97.62 97.62
VIT_11s0016g02870.t01 Wine grape mitochondrion 77.18 76.88
GSMUA_Achr9P00130_001 Banana mitochondrion 73.02 73.6
KRH41466 Soybean cytosol, mitochondrion 21.83 73.33
KRH60182 Soybean nucleus 72.22 71.23
KRH41465 Soybean mitochondrion 50.6 71.23
GSMUA_Achr7P13650_001 Banana mitochondrion 70.63 70.22
Solyc05g026150.1.1 Tomato cytosol, extracellular, mitochondrion 22.42 69.33
Zm00001d025260_P001 Maize mitochondrion 28.37 69.08
Os01t0739000-01 Rice mitochondrion 67.86 68.54
TraesCS1D01G346100.1 Wheat mitochondrion 66.87 67.54
TraesCS1B01G356900.1 Wheat golgi 66.67 67.33
Os05t0524300-01 Rice mitochondrion, plastid 64.09 65.38
HORVU1Hr1G075540.3 Barley mitochondrion 66.67 62.57
TraesCS3B01G311800.1 Wheat mitochondrion 61.9 62.53
Zm00001d038776_P001 Maize mitochondrion 64.88 61.93
TraesCS3D01G277900.1 Wheat mitochondrion 61.31 61.92
KRG99915 Soybean cytosol 10.71 58.06
Os01t0191500-01 Rice mitochondrion 56.94 56.83
KXG31644 Sorghum mitochondrion 56.55 56.44
Zm00001d039505_P001 Maize mitochondrion 56.35 56.24
TraesCS3A01G107500.3 Wheat golgi, nucleus 55.95 55.84
TraesCS3A01G277600.1 Wheat mitochondrion 61.71 55.04
HORVU3Hr1G019540.2 Barley plasma membrane 55.16 51.39
TraesCS3D01G109500.1 Wheat plastid 56.15 50.9
TraesCS3B01G126300.1 Wheat plastid 55.36 50.36
KRH15783 Soybean cytosol 32.14 45.38
Solyc05g012480.2.1 Tomato plastid 26.59 25.14
Solyc02g088700.2.1 Tomato plastid 25.0 23.68
Protein Annotations
MapMan:18.10.2.2.1MapMan:2.4.3.3.1Gene3D:3.30.830.10GO:GO:0003674GO:GO:0003824GO:GO:0004222
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0005743GO:GO:0006508GO:GO:0006627GO:GO:0006810GO:GO:0008150GO:GO:0008152
GO:GO:0008270GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016787GO:GO:0019538
GO:GO:0046872UniProt:K4DBV1MEROPS:M16.985InterPro:Metalloenz_LuxS/M16PFAM:PF00675PFAM:PF05193
ScanProsite:PS00143PANTHER:PTHR11851PANTHER:PTHR11851:SF157InterPro:Pept_M16_NInterPro:Pept_M16_Zn_BSInterPro:Peptidase_M16_C
SUPFAM:SSF63411EnsemblPlantsGene:Solyc12g008630.1EnsemblPlants:Solyc12g008630.1.1UniParc:UPI0002769576SEG:seg:
Description
No Description!
Coordinates
chr12:-:2007849..2015328
Molecular Weight (calculated)
54678.4 Da
IEP (calculated)
6.435
GRAVY (calculated)
-0.081
Length
504 amino acids
Sequence
(BLAST)
001: MYRCVSSRLS SLKARQGNRV LTRFSSSAAV ATKPSGGLFS WITGDTSSSV TPLDFPLNDV KLSPPLPDYV EPAKTRITTL ANGVKVASEA SVNPAASIGL
101: YVDCGSIYET PVSYGATHLL ERMAFKSTLN RSHLRIVREI EAIGGNVTAS ASREHMIYTY DALKTYVPQM VEMLVDCVRN PAFLDWEVKE QLEKVKAEIS
201: EYSKNPQHLL LEAVHSAGYA GPYGNSLMAT EATINRLNST VLEEFVAANY TAPRMVLAAS GVEHEEFLKV AEPLLSDLPK VSATEEPKPV YVGGDYRCQA
301: DAEMTHFALA FEVPGGWMSE KESMTLTVLQ MLMGGGGSFS AGGPGKGMYS RLYLRVLNQY PQIHAFSAFS SIYNNTGLFG IQGTTGSDFG PQAVDVAVKE
401: LIAVANPSEV DQVQLNRAKQ ATKSAILMNL ESRMVASEDI GRQLLTYGER KPVEHFLKAI DAVSAKDIAS VVQKLISSPL TMASYGDVLS LPSYDAVSSR
501: FRSK
Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)
001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR
Arabidopsis Description
Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.