CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
nucleus: 24385303
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41465	Soybean	mitochondrion	66.93	95.53
KRH41466	Soybean	cytosol, mitochondrion	27.59	94.0
VIT_11s0016g02870.t01	Wine grape	mitochondrion	79.45	80.24
KRG99915	Soybean	cytosol	14.09	77.42
GSMUA_Achr9P00130_001	Banana	mitochondrion	75.34	77.0
GSMUA_Achr7P13650_001	Banana	mitochondrion	75.54	76.13
KRH44259	Soybean	mitochondrion	73.58	74.46
KRH09954	Soybean	mitochondrion	71.43	74.34
KRH47194	Soybean	mitochondrion	73.19	74.06
KRH23379	Soybean	endoplasmic reticulum	69.86	72.71
Solyc12g008630.1.1	Tomato	plastid	71.23	72.22
PGSC0003DMT400000784	Potato	mitochondrion	71.23	72.22
Zm00001d025260_P001	Maize	mitochondrion	29.16	71.98
Os01t0739000-01	Rice	mitochondrion	69.08	70.74
TraesCS1D01G346100.1	Wheat	mitochondrion	67.12	68.74
TraesCS1B01G356900.1	Wheat	golgi	66.93	68.54
Os05t0524300-01	Rice	mitochondrion, plastid	64.77	67.0
TraesCS3D01G277900.1	Wheat	mitochondrion	63.21	64.73
TraesCS3B01G311800.1	Wheat	mitochondrion	63.01	64.53
HORVU1Hr1G075540.3	Barley	mitochondrion	67.71	64.43
Zm00001d038776_P001	Maize	mitochondrion	66.54	64.39
Solyc05g026150.1.1	Tomato	cytosol, extracellular, mitochondrion	20.16	63.19
KRH15783	Soybean	cytosol	43.25	61.9
Os01t0191500-01	Rice	mitochondrion	60.47	61.19
KXG31644	Sorghum	mitochondrion	59.88	60.59
Zm00001d039505_P001	Maize	mitochondrion	59.3	60.0
TraesCS3A01G107500.3	Wheat	golgi, nucleus	58.51	59.21
TraesCS3A01G277600.1	Wheat	mitochondrion	63.6	57.52
HORVU3Hr1G019540.2	Barley	plasma membrane	58.51	55.27
TraesCS3D01G109500.1	Wheat	plastid	59.1	54.32
TraesCS3B01G126300.1	Wheat	plastid	58.71	54.15
KRH38482	Soybean	cytosol, plastid	8.41	48.86
KRH45936	Soybean	cytosol, mitochondrion, plastid	7.05	47.37
KRH07415	Soybean	mitochondrion	27.4	26.77
KRH46614	Soybean	mitochondrion	27.2	26.33
KRG99600	Soybean	mitochondrion	26.61	25.81

Protein Annotations

EntrezGene:100787769	MapMan:18.10.2.2.1	MapMan:2.4.3.3.1	Gene3D:3.30.830.10	EMBL:ACUP02003352	EnsemblPlantsGene:GLYMA_05G225000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006508	GO:GO:0006627
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	UniProt:I1K609	EnsemblPlants:KRH60182
ProteinID:KRH60182	ProteinID:KRH60182.1	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	ScanProsite:PS00143
PANTHER:PTHR11851	PANTHER:PTHR11851:SF157	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C	SUPFAM:SSF63411
UniParc:UPI0001BA90FE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:40376407..40381768

Molecular Weight (calculated)

55158.8 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.068

Length

511 amino acids

Sequence
(BLAST)

001: MYRNAASRLR AIKARSCSSS SRVPASARFA SSVATQQSSS SGLGGLFGWL TGDRTSSLPS LGFPLPGVTL PPPLPDYVAP GKTIITTLPN GLKVASETSP
101: SPTASIGLYV DCGSIYESPI SFGATHLLER MAFKTTRNRS HFRVVREVEA IGGNVQASAS REQMGYTFDA LKTYVPEMVE LLVDCVRNPV FLDWEVNEQL
201: LKVKAEIGEA SKNPQDLLLE AIHSAGFSGA LANPLLASES AVNRLNSTIL EEFVAENYTA PRIVLAASGV EHEELLSIAE PLLSDLPSVP RPEEPKSVYT
301: GGDYRCQKES GRTHFALAFE LPGGWHKLKD AMVLTVLQML LGGGGSFSAG GPGKGMYSRL YQNVLNEYPQ VHEISAFNNI YNDTGIFGIQ VTTGSDFVSK
401: AIDIAANEIL AVATPGQVDQ VQLDRAKQAT KSAILMNLES RMVVSEDIGR QILTYGERKP VEDFLKAVDE VTSKDITSIS RKLICSPLTM ASYGDVLYVP
501: SYESVSLKFR A

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.