CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
nucleus: 24385303
extracellular: 25724908
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99600	Soybean	mitochondrion	96.78	96.96
VIT_14s0108g01650.t01	Wine grape	plastid	83.71	88.58
KRH07415	Soybean	mitochondrion	85.42	86.23
Bra039151.1-P	Field mustard	mitochondrion	78.6	78.45
Bra021477.1-P	Field mustard	mitochondrion	77.27	77.42
AT3G02090.2	Thale cress	mitochondrion	74.62	73.64
Solyc05g012480.2.1	Tomato	plastid	73.48	72.8
PGSC0003DMT400072957	Potato	mitochondrion	73.48	72.8
Os03t0212700-01	Rice	mitochondrion	73.3	72.61
EER95286	Sorghum	mitochondrion	71.97	71.7
TraesCS4A01G056200.2	Wheat	mitochondrion	71.4	71.13
TraesCS4D01G248100.2	Wheat	golgi, mitochondrion	71.4	71.0
TraesCS4B01G248700.2	Wheat	golgi, mitochondrion	71.02	70.75
HORVU0Hr1G008980.1	Barley	cytosol	52.84	66.75
HORVU4Hr1G068460.3	Barley	mitochondrion, plasma membrane	71.21	60.55
KRH09954	Soybean	mitochondrion	25.76	27.7
KRH41465	Soybean	mitochondrion	18.75	27.65
KRH47194	Soybean	mitochondrion	26.14	27.33
KRH60182	Soybean	nucleus	26.33	27.2
KRH44259	Soybean	mitochondrion	25.76	26.93
KRG99915	Soybean	cytosol	4.73	26.88
KRH23379	Soybean	endoplasmic reticulum	24.62	26.48
KRH41466	Soybean	cytosol, mitochondrion	7.39	26.0
KRH38482	Soybean	cytosol, plastid	3.6	21.59
KRH15783	Soybean	cytosol	11.74	17.37
KRH45936	Soybean	cytosol, mitochondrion, plastid	2.46	17.11

Protein Annotations

EntrezGene:100811552	MapMan:18.10.2.2.2	MapMan:2.4.3.3.2	Gene3D:3.30.830.10	EMBL:ACUP02005351	ncoils:Coil
EnsemblPlantsGene:GLYMA_08G346200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005750	GO:GO:0006091
GO:GO:0006122	GO:GO:0006139	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009060	GO:GO:0009987	GO:GO:0016020	GO:GO:0016485	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	UniProt:I1KZ13	EnsemblPlants:KRH46614	ProteinID:KRH46614	ProteinID:KRH46614.1	MEROPS:M16.003
InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	ScanProsite:PS00143	PANTHER:PTHR11851	PANTHER:PTHR11851:SF133
InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C	SUPFAM:SSF63411	UniParc:UPI0002339299	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:46096776..46101833

Molecular Weight (calculated)

58956.0 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.363

Length

528 amino acids

Sequence
(BLAST)

001: MSLNRLLSVA RRSDRRASAL SSLRSLSASA AAVAPSASSP PAPLPPTAMI YDRAAEAVKS KLRQLENPDP RFLKHGSPRP TLSDHTRILS SPETRVTTLP
101: NGLRIATEST LSARTATVGV WIDAGSRFET EETNGTAHFL EHMIFKGTER RNARELEEEI ENMGGHLNAY TSREQTTYYA KVTDKDVPQA LDILADILQN
201: SRFEETRINR ERDVILREME EVEGQTEEVI FDHLHATAFQ YTPLGRTILG PAQNIKTITK AHLQSYIQTH YTAPRMVIAA SGAVKHEDIV EQVKKLFTKL
301: STDPTTTSQL VAREPAIFTG SEVRMLDDDI PLAQFAVAFE GASWKDPDSI PLMVMQAMLG SWNKAAGGGK HMGSELAQRI GINEVAESIM AFNTNYKDTG
401: LFGVYAVAKP DCLDDLSYAI MYETTKLAYR VSEDDVTRAR NQLKSSLLLH IDGTSPVAED IGRQLLTYGR RIPFAELFAR IDAVDASTIK RVANRFIYDK
501: DVVIAATGPI QRLPDYNWFR RRTYWNRY

Best Arabidopsis Sequence Match ( AT3G02090.1 )
(BLAST)

001: MAMKNLLSLA RRSQRRLFLT QATRSSSSFS AIDSVPASAS PTALSPPPPH LMPYDHAAEI IKNKIKKLEN PDKRFLKYAS PHPILASHNH ILSAPETRVT
101: TLPNGLRVAT ESNLSAKTAT VGVWIDAGSR FESDETNGTA HFLEHMIFKG TDRRTVRALE EEIEDIGGHL NAYTSREQTT YYAKVLDSNV NQALDVLADI
201: LQNSKFEEQR INRERDVILR EMQEVEGQTD EVVLDHLHAT AFQYTPLGRT ILGPAQNVKS ITREDLQNYI KTHYTASRMV IAAAGAVKHE EVVEQVKKLF
301: TKLSSDPTTT SQLVANEPAS FTGSEVRMID DDLPLAQFAV AFEGASWTDP DSVALMVMQT MLGSWNKNVG GGKHVGSDLT QRVAINEIAE SIMAFNTNYK
401: DTGLFGVYAV AKADCLDDLS YAIMYEVTKL AYRVSDADVT RARNQLKSSL LLHMDGTSPI AEDIGRQLLT YGRRIPTAEL FARIDAVDAS TVKRVANKYI
501: YDKDIAISAI GPIQDLPDYN KFRRRTYWNR Y

Arabidopsis Description

MPPBETAInsulinase (Peptidase family M16) protein [Source:TAIR;Acc:AT3G02090]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.