CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44613
KRH47291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51980.1	KRH44613	AT3G21150.1	21798944
AT1G51980.1	KRH47291	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09954	Soybean	mitochondrion	95.11	95.11
KRH44259	Soybean	mitochondrion	84.52	82.18
KRH47194	Soybean	mitochondrion	84.52	82.18
VIT_09s0002g03200.t01	Wine grape	mitochondrion	80.65	78.26
GSMUA_Achr9P00130_001	Banana	mitochondrion	75.97	74.6
GSMUA_Achr7P13650_001	Banana	mitochondrion	75.76	73.37
KRH41465	Soybean	mitochondrion	52.34	71.79
KRH60182	Soybean	nucleus	72.71	69.86
Os01t0739000-01	Rice	mitochondrion	70.88	69.74
Zm00001d025260_P001	Maize	mitochondrion	29.33	69.57
TraesCS1D01G346100.1	Wheat	mitochondrion	70.26	69.14
KRH41466	Soybean	cytosol, mitochondrion	20.98	68.67
TraesCS1B01G356900.1	Wheat	golgi	69.65	68.54
Os05t0524300-01	Rice	mitochondrion, plastid	68.84	68.42
CDY33843	Canola	mitochondrion	69.04	67.53
CDY45641	Canola	mitochondrion	69.04	67.26
CDY22877	Canola	mitochondrion	69.04	67.26
Bra030405.1-P	Field mustard	mitochondrion	69.04	67.26
CDX87868	Canola	mitochondrion	68.84	67.06
CDY46536	Canola	mitochondrion	68.43	66.93
CDY53441	Canola	mitochondrion	68.43	66.93
Bra014305.1-P	Field mustard	mitochondrion	68.43	66.93
Bra018939.1-P	Field mustard	mitochondrion	68.64	66.6
Zm00001d038776_P001	Maize	mitochondrion	71.49	66.48
AT3G16480.1	Thale cress	mitochondrion	67.41	66.33
TraesCS3D01G277900.1	Wheat	mitochondrion	66.6	65.53
TraesCS3B01G311800.1	Wheat	mitochondrion	65.78	64.73
AT1G51980.1	Thale cress	mitochondrion	66.19	64.61
HORVU1Hr1G075540.3	Barley	mitochondrion	69.86	63.87
CDX92075	Canola	mitochondrion	64.15	63.64
CDY06399	Canola	mitochondrion	30.75	63.45
Bra022162.1-P	Field mustard	mitochondrion	63.95	63.43
CDY43102	Canola	mitochondrion	63.75	63.36
KRG99915	Soybean	cytosol	11.61	61.29
KRH45936	Soybean	cytosol, mitochondrion, plastid	9.16	59.21
Os01t0191500-01	Rice	mitochondrion	60.9	59.21
Zm00001d039505_P001	Maize	mitochondrion	60.08	58.42
KXG31644	Sorghum	mitochondrion	60.08	58.42
TraesCS3A01G107500.3	Wheat	golgi, nucleus	59.47	57.82
TraesCS3A01G277600.1	Wheat	mitochondrion	66.19	57.52
KRH38482	Soybean	cytosol, plastid	10.18	56.82
HORVU3Hr1G019540.2	Barley	plasma membrane	59.27	53.79
TraesCS3B01G126300.1	Wheat	plastid	60.29	53.43
TraesCS3D01G109500.1	Wheat	plastid	60.49	53.42
KRH15783	Soybean	cytosol	34.22	47.06
KRH07415	Soybean	mitochondrion	26.68	25.05
KRH46614	Soybean	mitochondrion	26.48	24.62
KRG99600	Soybean	mitochondrion	26.07	24.29

Protein Annotations

EntrezGene:100780666	MapMan:18.10.2.2.1	MapMan:2.4.3.3.1	Gene3D:3.30.830.10	EMBL:ACUP02008462	EnsemblPlantsGene:GLYMA_13G353500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006627	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	UniProt:I1M5F7	EnsemblPlants:KRH23379	ProteinID:KRH23379
ProteinID:KRH23379.1	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	PANTHER:PTHR11851	PANTHER:PTHR11851:SF157
InterPro:Pept_M16_N	InterPro:Peptidase_M16_C	SUPFAM:SSF63411	UniParc:UPI000233B202	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:44204963..44209251

Molecular Weight (calculated)

52912.4 Da

IEP (calculated)

6.201

GRAVY (calculated)

-0.084

Length

491 amino acids

Sequence
(BLAST)

001: MYRAVSSRLT LPKGNGRTLG ASRGLFRWLT GESSNPLPPL DTPLRGVSLP PSLPDFVEPS NTKITTLPNG LKIASETSPN PAASIGLYLD CGSLYETPLS
101: SGASLLLEKM SFKSTANRSH FRVVREVEAI GGNVGASASR EQMGYTFDAL KTYVPQMIEL LIDCVRNPAF LDWEVNEELR KVKAELGELS NNPQGLLLEA
201: VHSAGYSGAL ANPLLASETA LNRLNSSLLE EFVAENYTAS RMVLAASGVE HEELLSVAEP LLSDLPSVPR PEEPKSNYVG GDFRRQGESG VARVAIAFEV
301: PGGWKKEKEA IALTILQMLM GGGGSFSAGG PGKGMHSRLF LRVLNEHQQI HSFSAFNSLF NNTGLFGIYA STGSDFVAKA VDLAARELIA IASPGQVTQV
401: QLDLAKLSTK SAVLMNLESR MIASEDIGRQ VLTYGERKPL EQFLNAVDGI TLNDITKISQ KIISSPLTMA SYGDVFNVPC YESVSRKFHA K

Best Arabidopsis Sequence Match ( AT3G16480.1 )
(BLAST)

001: MYRTAASRAK ALKGILNHNF RASRYASSSA VATSSSSSSW LSGGYSSSLP SMNIPLAGVS LPPPLSDHVE PSKLKTTTLP NGLTIATEMS PNPAASIGLY
101: VDCGSIYETP QFRGATHLLE RMAFKSTLNR SHFRLVREIE AIGGNTSASA SREQMGYTID ALKTYVPEMV EVLIDSVRNP AFLDWEVNEE LRKVKVEIGE
201: FATNPMGFLL EAVHSAGYSG ALANPLYAPE SAITGLTGEV LENFVFENYT ASRMVLAASG VDHEELLKVV EPLLSDLPNV PRPAEPKSQY VGGDFRQHTG
301: GEATHFALAF EVPGWNNEKE AIIATVLQML MGGGGSFSAG GPGKGMHSWL YLRLLNQHQQ FQSCTAFTSV FNNTGLFGIY GCTSPEFASQ GIELVASEMN
401: AVADGKVNQK HLDRAKAATK SAILMNLESR MIAAEDIGRQ ILTYGERKPV DQFLKTVDQL TLKDIADFTS KVITKPLTMA TFGDVLNVPS YDSVSKRFR

Arabidopsis Description

MPPA2Probable mitochondrial-processing peptidase subunit alpha-2, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O04308]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.