CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82214
CDY19582
CDY32408
CDY50075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51980.1	CDX82214	AT3G21150.1	21798944
AT1G51980.1	CDY19582	AT3G21150.1	21798944
AT1G51980.1	CDY32408	AT3G21150.1	21798944
AT1G51980.1	CDY50075	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22877	Canola	mitochondrion	85.29	40.28
CDY33843	Canola	mitochondrion	84.45	40.04
CDX87868	Canola	mitochondrion	82.77	39.09
CDY45641	Canola	mitochondrion	82.77	39.09
CDY46536	Canola	mitochondrion	80.25	38.05
CDY53441	Canola	mitochondrion	79.83	37.85
Zm00001d025260_P001	Maize	mitochondrion	32.77	37.68
AT1G51980.1	Thale cress	mitochondrion	78.57	37.18
CDX92075	Canola	mitochondrion	71.01	34.14
CDY43102	Canola	mitochondrion	69.75	33.6
KRH09954	Soybean	mitochondrion	63.87	30.96
KRH23379	Soybean	endoplasmic reticulum	63.45	30.75
VIT_09s0002g03200.t01	Wine grape	mitochondrion	63.87	30.04
KRH47194	Soybean	mitochondrion	63.45	29.9
KRH44259	Soybean	mitochondrion	62.6	29.5
GSMUA_Achr9P00130_001	Banana	mitochondrion	60.92	29.0
GSMUA_Achr7P13650_001	Banana	mitochondrion	61.76	28.99
Os01t0739000-01	Rice	mitochondrion	59.66	28.46
TraesCS1D01G346100.1	Wheat	mitochondrion	58.82	28.06
TraesCS1B01G356900.1	Wheat	golgi	57.98	27.66
Os05t0524300-01	Rice	mitochondrion, plastid	57.14	27.53
TraesCS3B01G311800.1	Wheat	mitochondrion	55.04	26.25
TraesCS3D01G277900.1	Wheat	mitochondrion	55.04	26.25
HORVU1Hr1G075540.3	Barley	mitochondrion	58.4	25.88
Zm00001d038776_P001	Maize	mitochondrion	57.14	25.76
TraesCS3A01G277600.1	Wheat	mitochondrion	55.46	23.36
TraesCS3A01G107500.3	Wheat	golgi, nucleus	48.32	22.77
KXG31644	Sorghum	mitochondrion	48.32	22.77
Os01t0191500-01	Rice	mitochondrion	48.32	22.77
Zm00001d039505_P001	Maize	mitochondrion	47.06	22.18
HORVU3Hr1G019540.2	Barley	plasma membrane	49.16	21.63
TraesCS3B01G126300.1	Wheat	plastid	48.74	20.94
TraesCS3D01G109500.1	Wheat	plastid	48.74	20.86
CDY55794	Canola	mitochondrion	13.03	9.75
CDY34703	Canola	mitochondrion	20.17	9.09
CDY43262	Canola	mitochondrion	19.75	8.88
CDY37550	Canola	mitochondrion	19.75	8.88
KRH38482	Soybean	cytosol, plastid	2.52	6.82
KRH45936	Soybean	cytosol, mitochondrion, plastid	2.1	6.58
CDY69859	Canola	cytosol, mitochondrion, peroxisome	3.36	4.68

Protein Annotations

EnsemblPlants:CDY06399	EnsemblPlantsGene:GSBRNA2T00122372001	Gene3D:3.30.830.10	GO:A0A078F0L8	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0046872	InterPro:Metalloenz_LuxS/M16	InterPro:Peptidase_M16_C	PANTHER:PTHR11851	PANTHER:PTHR11851:SF157
PFAM:PF05193	ProteinID:CDY06399	ProteinID:CDY06399.1	SEG:seg	SUPFAM:SSF63411	UniParc:UPI0004EF1070
MapMan:50.3.4	:	:	:	:	:

Description

BnaC05g31310D

Coordinates

chrLK031969:+:335123..336674

Molecular Weight (calculated)

25758.2 Da

IEP (calculated)

6.417

GRAVY (calculated)

0.002

Length

238 amino acids

Sequence
(BLAST)

001: MYRTAASRAK ALKGVFQPPP LPGHVEPSKL KITALPNGLK IASHMSPLRK MKVEIAELAK NPMGLLMEAV HTAAYSGALA NPLYAHESAL DRLNGELLEE
101: FMTENFTVAR MVLAASGVEH EELLQVAEPL TSDLPNVPRQ VEPKSQYTGG DFLQHTGGDF LQHTGGEATH FALAFEVPGW NNEKEAVIAT VLQMLMGGGG
201: SFSAGGPGKG MHSWLCKSNL VCVTYGFIEL LFFCYFLN

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.