CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82214
CDY19582
CDY32408
CDY50075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51980.1	CDX82214	AT3G21150.1	21798944
AT1G51980.1	CDY19582	AT3G21150.1	21798944
AT1G51980.1	CDY32408	AT3G21150.1	21798944
AT1G51980.1	CDY50075	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030405.1-P	Field mustard	mitochondrion	99.6	99.6
CDX87868	Canola	mitochondrion	99.21	99.21
CDY22877	Canola	mitochondrion	96.03	96.03
CDY33843	Canola	mitochondrion	95.24	95.62
CDY46536	Canola	mitochondrion	93.85	94.22
CDY53441	Canola	mitochondrion	92.86	93.23
AT1G51980.1	Thale cress	mitochondrion	90.08	90.26
CDY06399	Canola	mitochondrion	39.09	82.77
CDX92075	Canola	mitochondrion	78.97	80.4
CDY43102	Canola	mitochondrion	78.37	79.96
VIT_09s0002g03200.t01	Wine grape	mitochondrion	71.83	71.54
KRH47194	Soybean	mitochondrion	70.63	70.5
KRH44259	Soybean	mitochondrion	70.44	70.3
KRH09954	Soybean	mitochondrion	68.45	70.26
GSMUA_Achr9P00130_001	Banana	mitochondrion	68.65	69.2
Zm00001d025260_P001	Maize	mitochondrion	28.37	69.08
KRH23379	Soybean	endoplasmic reticulum	67.26	69.04
GSMUA_Achr7P13650_001	Banana	mitochondrion	69.05	68.64
Os01t0739000-01	Rice	mitochondrion	67.26	67.94
TraesCS1D01G346100.1	Wheat	mitochondrion	65.48	66.13
TraesCS1B01G356900.1	Wheat	golgi	65.08	65.73
Os05t0524300-01	Rice	mitochondrion, plastid	63.29	64.57
Zm00001d038776_P001	Maize	mitochondrion	66.27	63.26
HORVU1Hr1G075540.3	Barley	mitochondrion	65.87	61.83
TraesCS3B01G311800.1	Wheat	mitochondrion	60.52	61.12
TraesCS3D01G277900.1	Wheat	mitochondrion	60.32	60.92
Os01t0191500-01	Rice	mitochondrion	57.54	57.43
TraesCS3A01G107500.3	Wheat	golgi, nucleus	54.96	54.85
Zm00001d039505_P001	Maize	mitochondrion	54.76	54.65
KXG31644	Sorghum	mitochondrion	54.56	54.46
TraesCS3A01G277600.1	Wheat	mitochondrion	60.52	53.98
HORVU3Hr1G019540.2	Barley	plasma membrane	54.96	51.2
TraesCS3D01G109500.1	Wheat	plastid	55.75	50.54
TraesCS3B01G126300.1	Wheat	plastid	54.96	50.0
KRH45936	Soybean	cytosol, mitochondrion, plastid	6.55	43.42
KRH38482	Soybean	cytosol, plastid	6.94	39.77
CDY55794	Canola	mitochondrion	16.27	25.79
CDY43262	Canola	mitochondrion	26.19	24.95
CDY37550	Canola	mitochondrion	26.19	24.95
CDY34703	Canola	mitochondrion	25.99	24.81
CDY69859	Canola	cytosol, mitochondrion, peroxisome	7.94	23.39

Protein Annotations

MapMan:18.10.2.2.1	MapMan:2.4.3.3.1	Gene3D:3.30.830.10	GO:A0A078I714	UniProt:A0A078I714	EnsemblPlants:CDY45641
ProteinID:CDY45641	ProteinID:CDY45641.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00082394001	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	ScanProsite:PS00143	PANTHER:PTHR11851
PANTHER:PTHR11851:SF157	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C	SUPFAM:SSF63411	UniParc:UPI0004EEC90A
SEG:seg	:	:	:	:	:

Description

BnaA05g15080DBnaA05g15080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I714]

Coordinates

chrLK032631:+:110243..113547

Molecular Weight (calculated)

54465.1 Da

IEP (calculated)

6.439

GRAVY (calculated)

-0.141

Length

504 amino acids

Sequence
(BLAST)

001: MYRTAASRAR ALKGSLSRSL RPARYASSSA VATSSSSSSP GFFSWLTGGS SSSLNSLDMP LQGVSLPPPL ADLVEPSKLK ITTLPNGLKI ASEMSPNPAA
101: SIGLYVDCGS IYEAPYFHGA THLLERMAFK STRNRSHLRL VREIEAIGGN TSASASREQM SYTIDALKTY VPEMVEVLID SVRNPAFLDW EVNEELRKMK
201: LEIAELAKNP MGLLMEAVHS AGYSGALANP LYAPESALDR LNGELLEEFM AENFTAARMV LAASGVEHEE LLKVVEPLTS DLPNVPRQAE PKSQYTGGDF
301: RQHTGGEATH FALAFEVPGW NNEKEAVIAT VLQMLMGGGG SFSAGGPGKG MHSWLYLRIL NEYQQVQSCT AFSSIFNNTG LFGIYGCSSP EFAAKAIELA
401: AKEMKDVAGG KVNQKHLDRA KAATKSAVLM NLESRMIAAE DIGRQILTYG ERKPVEQFLK TVDGLTLKDI TDFTSKIISK PLTMGSFGDV LSVPSYDTIS
501: SKFS

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.