CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82214
CDY19582
CDY32408
CDY50075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51980.1	CDX82214	AT3G21150.1	21798944
AT1G51980.1	CDY19582	AT3G21150.1	21798944
AT1G51980.1	CDY32408	AT3G21150.1	21798944
AT1G51980.1	CDY50075	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018939.1-P	Field mustard	mitochondrion	99.21	98.81
CDY33843	Canola	mitochondrion	98.21	98.61
CDX87868	Canola	mitochondrion	96.03	96.03
CDY45641	Canola	mitochondrion	96.03	96.03
CDY46536	Canola	mitochondrion	94.25	94.62
CDY53441	Canola	mitochondrion	93.06	93.43
AT1G51980.1	Thale cress	mitochondrion	88.69	88.87
CDY06399	Canola	mitochondrion	40.28	85.29
CDX92075	Canola	mitochondrion	77.98	79.39
CDY43102	Canola	mitochondrion	77.18	78.74
VIT_09s0002g03200.t01	Wine grape	mitochondrion	71.03	70.75
KRH47194	Soybean	mitochondrion	70.24	70.1
KRH09954	Soybean	mitochondrion	68.25	70.06
KRH44259	Soybean	mitochondrion	69.84	69.7
KRH23379	Soybean	endoplasmic reticulum	67.26	69.04
GSMUA_Achr9P00130_001	Banana	mitochondrion	68.45	69.0
Zm00001d025260_P001	Maize	mitochondrion	28.17	68.6
GSMUA_Achr7P13650_001	Banana	mitochondrion	68.45	68.05
Os01t0739000-01	Rice	mitochondrion	66.27	66.93
TraesCS1D01G346100.1	Wheat	mitochondrion	65.28	65.93
TraesCS1B01G356900.1	Wheat	golgi	65.08	65.73
Os05t0524300-01	Rice	mitochondrion, plastid	63.69	64.98
Zm00001d038776_P001	Maize	mitochondrion	65.87	62.88
HORVU1Hr1G075540.3	Barley	mitochondrion	65.87	61.83
TraesCS3B01G311800.1	Wheat	mitochondrion	60.52	61.12
TraesCS3D01G277900.1	Wheat	mitochondrion	60.32	60.92
Os01t0191500-01	Rice	mitochondrion	57.54	57.43
Zm00001d039505_P001	Maize	mitochondrion	55.56	55.45
TraesCS3A01G107500.3	Wheat	golgi, nucleus	55.36	55.25
KXG31644	Sorghum	mitochondrion	55.36	55.25
TraesCS3A01G277600.1	Wheat	mitochondrion	60.52	53.98
HORVU3Hr1G019540.2	Barley	plasma membrane	55.36	51.57
TraesCS3D01G109500.1	Wheat	plastid	56.15	50.9
TraesCS3B01G126300.1	Wheat	plastid	55.36	50.36
KRH45936	Soybean	cytosol, mitochondrion, plastid	6.75	44.74
KRH38482	Soybean	cytosol, plastid	7.14	40.91
CDY55794	Canola	mitochondrion	15.87	25.16
CDY43262	Canola	mitochondrion	25.6	24.39
CDY37550	Canola	mitochondrion	25.6	24.39
CDY34703	Canola	mitochondrion	25.4	24.24
CDY69859	Canola	cytosol, mitochondrion, peroxisome	7.94	23.39

Protein Annotations

MapMan:18.10.2.2.1	MapMan:2.4.3.3.1	Gene3D:3.30.830.10	GO:A0A078GCV6	UniProt:A0A078GCV6	EnsemblPlants:CDY22877
ProteinID:CDY22877	ProteinID:CDY22877.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00021237001	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	ScanProsite:PS00143	PANTHER:PTHR11851
PANTHER:PTHR11851:SF157	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C	SUPFAM:SSF63411	UniParc:UPI0004EE4D7F
SEG:seg	:	:	:	:	:

Description

BnaA06g02000DBnaA06g02000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCV6]

Coordinates

chrLK032136:-:623680..627243

Molecular Weight (calculated)

54277.8 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.127

Length

504 amino acids

Sequence
(BLAST)

001: MYRTAASRAK ALKGSLSRGL APARYASSSA VATSSSSSSS GFFGWLTGGS SSSLASLDMP LQGVSLPPPL ADHVEPSKLK ITTLPNGLKI ASEMSPNPVA
101: SIGLYVDCGS IYEAPYFHGA THLLERMAFK STTNRSHLRL VREIEAIGGN TSASASREQM SYTIDALKTY VPEMVEVLID SVRNPAFLDW EVNEELRKMK
201: VEIAELAKNP MGLLMEAVHS AGYSGALANP LYAHESALDR LNGELLEEFM TENFTAARMV LAASGVEHEE LLQVVEPLTS DLPNVPRQGE PKSQYTGGDF
301: RQHTGGEATH FALAFEVPGW NNEKEAVIAT VLQMLMGGGG SFSAGGPGKG MHSWLYLRIL NEYQQVQSCT AFTSIFNNTG LFGIYGCSSP EFAAKAIELA
401: AKELKDVAGG KVNQKHLDRA KAATKSAVLM NLESRMIAAE DIGRQTLTYG ERKPVEQFLK TVDGLTLKDI TDFTSKIISK PLTMGSFGEV LSVPSYDTVS
501: SKFC

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.