CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44613
KRH47291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51980.1	KRH44613	AT3G21150.1	21798944
AT1G51980.1	KRH47291	AT3G21150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47194	Soybean	mitochondrion	97.03	97.03
KRH09954	Soybean	mitochondrion	83.17	85.54
KRH23379	Soybean	endoplasmic reticulum	82.18	84.52
VIT_09s0002g03200.t01	Wine grape	mitochondrion	82.18	82.02
GSMUA_Achr9P00130_001	Banana	mitochondrion	77.03	77.8
KRH41465	Soybean	mitochondrion	53.86	75.98
GSMUA_Achr7P13650_001	Banana	mitochondrion	75.64	75.35
KRH60182	Soybean	nucleus	74.46	73.58
Os01t0739000-01	Rice	mitochondrion	72.67	73.55
TraesCS1D01G346100.1	Wheat	mitochondrion	71.88	72.75
TraesCS1B01G356900.1	Wheat	golgi	71.88	72.75
KRH41466	Soybean	cytosol, mitochondrion	21.19	71.33
Bra030405.1-P	Field mustard	mitochondrion	70.3	70.44
CDY45641	Canola	mitochondrion	70.3	70.44
CDY33843	Canola	mitochondrion	69.9	70.32
Os05t0524300-01	Rice	mitochondrion, plastid	68.71	70.24
CDX87868	Canola	mitochondrion	70.1	70.24
CDY46536	Canola	mitochondrion	69.7	70.12
Bra014305.1-P	Field mustard	mitochondrion	69.7	70.12
Zm00001d025260_P001	Maize	mitochondrion	28.71	70.05
CDY22877	Canola	mitochondrion	69.7	69.84
Bra018939.1-P	Field mustard	mitochondrion	69.5	69.37
AT3G16480.1	Thale cress	mitochondrion	68.51	69.34
CDY53441	Canola	mitochondrion	68.91	69.32
Zm00001d038776_P001	Maize	mitochondrion	72.08	68.94
AT1G51980.1	Thale cress	mitochondrion	68.51	68.79
TraesCS3B01G311800.1	Wheat	mitochondrion	66.93	67.74
HORVU1Hr1G075540.3	Barley	mitochondrion	71.88	67.6
TraesCS3D01G277900.1	Wheat	mitochondrion	66.53	67.33
CDX92075	Canola	mitochondrion	65.54	66.87
Bra022162.1-P	Field mustard	mitochondrion	65.15	66.46
CDY43102	Canola	mitochondrion	64.55	65.99
CDY06399	Canola	mitochondrion	29.5	62.6
Os01t0191500-01	Rice	mitochondrion	60.4	60.4
KRG99915	Soybean	cytosol	11.09	60.22
TraesCS3A01G277600.1	Wheat	mitochondrion	66.93	59.82
TraesCS3A01G107500.3	Wheat	golgi, nucleus	59.8	59.8
Zm00001d039505_P001	Maize	mitochondrion	58.81	58.81
KXG31644	Sorghum	mitochondrion	58.61	58.61
HORVU3Hr1G019540.2	Barley	plasma membrane	59.01	55.08
TraesCS3D01G109500.1	Wheat	plastid	60.59	55.04
TraesCS3B01G126300.1	Wheat	plastid	60.2	54.87
KRH45936	Soybean	cytosol, mitochondrion, plastid	8.12	53.95
KRH38482	Soybean	cytosol, plastid	9.11	52.27
KRH15783	Soybean	cytosol	34.26	48.46
KRH46614	Soybean	mitochondrion	26.93	25.76
KRG99600	Soybean	mitochondrion	26.53	25.43
KRH07415	Soybean	mitochondrion	26.14	25.24

Protein Annotations

EntrezGene:100794691	MapMan:18.10.2.2.1	MapMan:2.4.3.3.1	Gene3D:3.30.830.10	EMBL:ACUP02004923	EnsemblPlantsGene:GLYMA_08G199900
GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006508	GO:GO:0006627
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	UniProt:I1KV08	EnsemblPlants:KRH44259
ProteinID:KRH44259	ProteinID:KRH44259.1	InterPro:Metalloenz_LuxS/M16	PFAM:PF00675	PFAM:PF05193	ScanProsite:PS00143
PANTHER:PTHR11851	PANTHER:PTHR11851:SF157	InterPro:Pept_M16_N	InterPro:Pept_M16_Zn_BS	InterPro:Peptidase_M16_C	SUPFAM:SSF63411
UniParc:UPI0002338B2E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:16145115..16150823

Molecular Weight (calculated)

54391.0 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.095

Length

505 amino acids

Sequence
(BLAST)

001: MYRVAASSFR RHLKGHGGNL GSIRFSTSAA VAARTSSGGL FSWLTGERSS ALPPLDIPLG GVALPDSLPD FVEQSKTKIT TLSNGLKIAS ETSPNPAASI
101: GLYLDCGSIY ETPFSSGASH LLERMAFKST TNRSHFRIVR EVEAIGGNVG ASASREQMGY TFDALKTYVP QMVELLVDCV RHPAFLDWEV NEELRKVKAE
201: LGELSNNPQG LLLEAIHSAG YSGALAYPLL APEAALNRLD GPSLEEFVAE NYTAPRMVLA ASGVEHEELL SIAEPLLSDL PKVPCPEEPK SVYVGGDFRR
301: HGEGGTHVAI AFEVPGGWQK EKDAIVLTVL QMLMGGGGSF SAGGPGKGMH SRLYLNVLNE YQQIQSFSAF NSIFNNTGLF GIYASTSPDF VPKTVDIAAK
401: ELIAIASPGQ VTQVQLDRAK KSTKSAVLMN LESRMIASED IGRQILTYGE RKPVEQFLKA VDEITLNDIT KIAQKIISSP LTMASYGDVM NVPSYESVNS
501: KFHAK

Best Arabidopsis Sequence Match ( AT1G51980.1 )
(BLAST)

001: MYRTAASRAR ALKGVLTRSL RPARYASSSA VAETSSSTPA YLSWLSGGSR AALTSLDMPL QGVSLPPPLA DKVEPSKLQI TTLPNGLKIA SETTPNPAAS
101: IGLYVDCGSI YEAPYFHGAT HLLERMAFKS TLNRTHFRLV REIEAIGGNT SASASREQMS YTIDALKTYV PEMVEVLIDS VRNPAFLDWE VNEELRKMKV
201: EIAELAKNPM GFLLEAIHSA GYSGPLASPL YAPESALDRL NGELLEEFMT ENFTAARMVL AASGVEHEEL LKVAEPLTSD LPNVPPQLAP KSQYVGGDFR
301: QHTGGEATHF AVAFEVPGWN NEKEAVTATV LQMLMGGGGS FSAGGPGKGM HSWLYRRVLN EYQEVQSCTA FTSIFNDTGL FGIYGCSSPQ FAAKAIELAA
401: KELKDVAGGK VNQAHLDRAK AATKSAVLMN LESRMIAAED IGRQILTYGE RKPVDQFLKS VDQLTLKDIA DFTSKVISKP LTMGSFGDVL AVPSYDTISS
501: KFR

Arabidopsis Description

Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.