Factsheet for Solyc09g050020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 5
plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093900.2.1
Solyc06g060080.2.1
Solyc08g067020.2.1
Solyc11g005050.1.1
Solyc11g039840.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00220.1	Solyc02g093900.2.1	AT3G27240.1	18189341
ATMG00220.1	Solyc06g060080.2.1	AT3G46430.1	18189341
ATMG00220.1	Solyc11g005050.1.1	AT3G46430.1	18189341
ATMG00220.1	Solyc08g067020.2.1	AT4G32470.1	18189341
ATMG00220.1	Solyc11g039840.1.1	AT5G13430.1	18189341
ATMG00220.1	Solyc02g093900.2.1	AT5G40810.1	18189341
ATMG00220.1	Solyc06g060080.2.1	AT5G59613.1	18189341
ATMG00220.1	Solyc11g005050.1.1	AT5G59613.1	18189341

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G430300.1	Wheat	plasma membrane	50.0	91.92
TraesCS1B01G413000.1	Wheat	mitochondrion	75.27	87.26
HORVU1Hr1G045710.1	Barley	extracellular	17.03	86.11
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	59.07	84.98
TraesCS3A01G188100.1	Wheat	peroxisome, plasma membrane, vacuole	40.38	84.0
TraesCS7A01G237900.1	Wheat	mitochondrion	79.12	82.05
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	64.01	82.04
HORVU1Hr1G009360.1	Barley	plasma membrane	63.46	77.78
ATMG00220.1	Thale cress	mitochondrion, plasma membrane	83.52	77.35
AT2G07727.1	Thale cress	mitochondrion, plasma membrane	83.52	77.35
GRMZM5G884707_P01	Maize	mitochondrion, plasma membrane	81.32	76.29
HORVU7Hr1G044370.1	Barley	plasma membrane	61.54	75.42
BAV58143	Barley	mitochondrion, plasma membrane	81.59	74.62
BAC19890	Rice	mitochondrion	81.32	74.56
TraesCS4D01G140500.1	Wheat	mitochondrion, plasma membrane	80.22	73.37
TraesCS7D01G239000.1	Wheat	mitochondrion	75.55	73.14
TraesCS2D01G564500.1	Wheat	mitochondrion	76.37	72.02
HORVU3Hr1G040840.1	Barley	plasma membrane	66.48	70.97
TraesCS1A01G112900.1	Wheat	mitochondrion	69.51	67.83
HORVU3Hr1G045040.1	Barley	cytosol	39.29	67.45
KRH57909	Soybean	mitochondrion	66.21	65.85
TraesCS4A01G150300.1	Wheat	mitochondrion, plasma membrane	71.7	62.59
GSMUA_AchrUn_...	Banana	plasma membrane	45.05	62.12
VIT_03s0110g00200.t01	Wine grape	cytosol	16.48	41.1
Solyc01g007530.2.1	Tomato	plastid	12.91	22.07
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	3.57	18.84
Solyc01g007540.2.1	Tomato	plastid	2.2	5.76

Protein Annotations

Gene3D:1.20.810.10	MapMan:2.4.3.1	InterPro:Cyt_b/b6_C	InterPro:Cyt_b/b6_C_sf	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Cytochrome_b	InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006122
GO:GO:0006139	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0022904	GO:GO:0045275
GO:GO:1902600	InterPro:IPR005797	InterPro:IPR005798	InterPro:IPR027387	UniProt:K4CT00	PFAM:PF00032
PFAM:PF00033	PIRSF:PIRSF038885	PFscan:PS51002	PFscan:PS51003	PANTHER:PTHR19271	SUPFAM:SSF81342
SUPFAM:SSF81648	EnsemblPlantsGene:Solyc09g050020.1	EnsemblPlants:Solyc09g050020.1.1	TMHMM:TMhelix	UniParc:UPI000276AD34	:

Description

No Description!

Coordinates

chr9:-:35300862..35302004

Molecular Weight (calculated)

41181.8 Da

IEP (calculated)

9.068

GRAVY (calculated)

0.563

Length

364 amino acids

Sequence
(BLAST)

001: MTIRNQRLSL LKQPISSTLN KHLIDYPTPS NLSYWWGFGS LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFFIVVH
101: LHIFRGLYHA SYSSPREFVR CLGFVIFLLM IVTAFIGYVL PWGQMSFWGA IVITSLDSAI PVVGDTIVTW LWGGFSVDNA TLNHFFSLHH LLPFILVGAS
201: LLHLAMYKIA SYPYFYVKDL VGWVAFAIFF SIWIFYAPNV LGNPDNYIPA NPMSTPPHIV PEWYVLPIHA ILRSIPDKSG GVAAIAPVFI CLLALPFFKS
301: MYVRSSSFRP IHQGVAFGRL LTTRLDRMST CGCTLCYHWT NFSFSFLLVL YHNAHSGMIL KRNS

Best Arabidopsis Sequence Match ( AT2G07727.1 )
(BLAST)

001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT

Arabidopsis Description

Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.