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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400074807 Potato mitochondrion 97.56 97.56
Bra011350.1-P Field mustard mitochondrion 65.85 77.88
CDY39888 Canola mitochondrion 77.24 77.87
Bra040079.1-P Field mustard mitochondrion 76.42 77.05
KRH16011 Soybean mitochondrion 76.42 77.05
CDY23327 Canola mitochondrion 76.42 77.05
GSMUA_Achr1P13480_001 Banana mitochondrion 76.42 76.42
KRH05106 Soybean endoplasmic reticulum, mitochondrion 74.8 75.41
Zm00001d005114_P001 Maize mitochondrion 74.8 74.8
AT4G32470.1 Thale cress mitochondrion 73.98 74.59
CDX68850 Canola mitochondrion 73.98 74.59
TraesCS5A01G456800.1 Wheat golgi, mitochondrion, unclear 73.98 73.98
CDX75248 Canola mitochondrion 73.17 73.77
EER96047 Sorghum mitochondrion 73.17 73.17
GSMUA_Achr9P07800_001 Banana mitochondrion 72.36 72.36
Zm00001d034528_P001 Maize mitochondrion 73.17 71.43
Os03t0806900-01 Rice mitochondrion 71.54 69.84
KXG37312 Sorghum mitochondrion 70.73 69.05
Os07t0205000-01 Rice mitochondrion 76.42 53.71
Os08t0246400-01 Rice mitochondrion 52.03 50.39
HORVU5Hr1G109620.2 Barley plastid 56.91 44.59
Zm00001d013041_P003 Maize mitochondrion 76.42 40.17
Protein Annotations
Gene3D:1.10.1090.10MapMan:2.4.3.6GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0005750
GO:GO:0005773GO:GO:0005774GO:GO:0006091GO:GO:0006122GO:GO:0006139GO:GO:0006810
GO:GO:0008121GO:GO:0008150GO:GO:0008152GO:GO:0009060GO:GO:0009536GO:GO:0009987
GO:GO:0016020GO:GO:0016043GO:GO:0034551GO:GO:0055114GO:GO:0070469GO:GO:1902600
InterPro:IPR036544UniProt:K4CLS8PFAM:PD008153PFAM:PF02271PIRSF:PIRSF000022PANTHER:PTHR12022
InterPro:QCR7InterPro:QCR7_sfSUPFAM:SSF81524EnsemblPlantsGene:Solyc08g067020.2EnsemblPlants:Solyc08g067020.2.1UniParc:UPI000276C094
SEG:seg:::::
Description
Cytochrome b-c1 complex subunit 7 [Source:UniProtKB/TrEMBL;Acc:K4CLS8]
Coordinates
chr8:+:55905065..55910087
Molecular Weight (calculated)
14500.7 Da
IEP (calculated)
9.610
GRAVY (calculated)
-0.566
Length
123 amino acids
Sequence
(BLAST)
001: MASSFSRWLV DPKKNPLAAI HMKTLSSRLR NYGLRYDDLY DPMYDLDVKE ALNRLPREIV DARNQRLLRA MDLSMKHQYL PEDLQAMQTP FRSYLQEMLT
101: LVKRESAERE ALGALPLYQR TLP
Best Arabidopsis Sequence Match ( AT5G25450.1 )
(BLAST)
001: MASFLQRLVD PRKNFLARMH MKSVSNRLRR YGLRYDDLYD PLYDLDIKEA LNRLPREIVD ARNQRLMRAM DLSMKHEYLP DNLQAVQTPF RSYLQDMLAL
101: VKRERAEREA LGALPLYQRT IP
Arabidopsis Description
QCR7-2Cytochrome b-c1 complex subunit 7 [Source:UniProtKB/TrEMBL;Acc:A0A178UDJ6]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.