CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 8
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05106	Soybean	endoplasmic reticulum, mitochondrion	97.54	97.54
AT5G25450.1	Thale cress	mitochondrion	80.33	80.33
CDY05350	Canola	mitochondrion	80.33	79.67
VIT_04s0008g05000.t01	Wine grape	cytosol	79.51	79.51
Bra020499.1-P	Field mustard	mitochondrion	79.51	78.86
Solyc08g067020.2.1	Tomato	plastid	77.05	76.42
CDY39888	Canola	mitochondrion	76.23	76.23
Bra011350.1-P	Field mustard	mitochondrion	63.93	75.0
PGSC0003DMT400074807	Potato	mitochondrion	75.41	74.8
GSMUA_Achr1P13480_001	Banana	mitochondrion	75.41	74.8
Bra040079.1-P	Field mustard	mitochondrion	74.59	74.59
CDY23327	Canola	mitochondrion	74.59	74.59
AT4G32470.1	Thale cress	mitochondrion	74.59	74.59
GSMUA_Achr9P07800_001	Banana	mitochondrion	72.95	72.36
CDX75248	Canola	mitochondrion	71.31	71.31
CDX68850	Canola	mitochondrion	71.31	71.31
EER96047	Sorghum	mitochondrion	69.67	69.11
Zm00001d005114_P001	Maize	mitochondrion	68.85	68.29
Os03t0806900-01	Rice	mitochondrion	68.85	66.67
Zm00001d034528_P001	Maize	mitochondrion	68.03	65.87
TraesCS5A01G456800.1	Wheat	golgi, mitochondrion, unclear	66.39	65.85
KXG37312	Sorghum	mitochondrion	66.39	64.29
CDY70525	Canola	mitochondrion	67.21	58.99
CDY05492	Canola	mitochondrion	67.21	58.99
Os07t0205000-01	Rice	mitochondrion	69.67	48.57
Os08t0246400-01	Rice	mitochondrion	46.72	44.88
HORVU5Hr1G109620.2	Barley	plastid	52.46	40.76
Zm00001d013041_P003	Maize	mitochondrion	69.67	36.32

Protein Annotations

Gene3D:1.10.1090.10	EntrezGene:100499867	MapMan:2.4.3.6	EMBL:ACUP02008754	EMBL:BT089894	UniProt:C6SXJ9
EnsemblPlantsGene:GLYMA_14G126300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005750	GO:GO:0006091
GO:GO:0006122	GO:GO:0006139	GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152
GO:GO:0009060	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0034551	GO:GO:0055114
GO:GO:0070469	GO:GO:1902600	InterPro:IPR036544	EnsemblPlants:KRH16011	ProteinID:KRH16011	ProteinID:KRH16011.1
PFAM:PD008153	PFAM:PF02271	PIRSF:PIRSF000022	PANTHER:PTHR12022	InterPro:QCR7	InterPro:QCR7_sf
SUPFAM:SSF81524	UniParc:UPI0001B1536B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:20159565..20162431

Molecular Weight (calculated)

14602.7 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.692

Length

122 amino acids

Sequence
(BLAST)

001: MASFLQWFLD PKKNWFAAQH MKSLSRRLRK YGLRYDDLYD PYYDLDVKEA LNRLPKEVVD ARHARLKRAI DLSMKHEYLP DNLQAMQTPF RGYLQDMLTL
101: VKRERAEREA LGGLPLYQRS IP

Best Arabidopsis Sequence Match ( AT5G25450.1 )
(BLAST)

001: MASFLQRLVD PRKNFLARMH MKSVSNRLRR YGLRYDDLYD PLYDLDIKEA LNRLPREIVD ARNQRLMRAM DLSMKHEYLP DNLQAVQTPF RSYLQDMLAL
101: VKRERAEREA LGALPLYQRT IP

Arabidopsis Description

QCR7-2Cytochrome b-c1 complex subunit 7 [Source:UniProtKB/TrEMBL;Acc:A0A178UDJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.