Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G188100.1 | Wheat | peroxisome, plasma membrane, vacuole | 41.55 | 88.57 |
| BAC19890 | Rice | mitochondrion | 91.42 | 85.89 |
| GRMZM5G884707_P01 | Maize | mitochondrion, plasma membrane | 89.28 | 85.82 |
| TraesCS7A01G237900.1 | Wheat | mitochondrion | 78.02 | 82.91 |
| TraesCS5A01G502900.1 | Wheat | plasma membrane | 42.9 | 82.05 |
| AT2G07727.1 | Thale cress | mitochondrion, plasma membrane | 85.79 | 81.42 |
| ATMG00220.1 | Thale cress | mitochondrion, plasma membrane | 85.79 | 81.42 |
| TraesCS5A01G430300.1 | Wheat | plasma membrane | 43.16 | 81.31 |
| TraesCS2A01G266300.1 | Wheat | plasma membrane | 41.29 | 78.97 |
| HORVU1Hr1G045710.1 | Barley | extracellular | 15.01 | 77.78 |
| TraesCS4A01G150300.1 | Wheat | mitochondrion, plasma membrane | 83.11 | 74.34 |
| KRH57909 | Soybean | mitochondrion | 72.92 | 74.32 |
| Solyc09g050020.1.1 | Tomato | nucleus | 67.83 | 69.51 |
| TraesCS1A01G130200.1 | Wheat | mitochondrion | 7.77 | 20.28 |
| TraesCS6A01G192500.1 | Wheat | plasma membrane | 10.46 | 16.81 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:2.4.3.1 | InterPro:Cyt_b/b6_C | InterPro:Cyt_b/b6_C_sf | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf |
| InterPro:Cytochrome_b | InterPro:Di-haem_cyt_TM | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006091 | GO:GO:0006122 | GO:GO:0006139 | GO:GO:0008121 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0022904 | GO:GO:0045275 | InterPro:IPR005797 | InterPro:IPR005798 | InterPro:IPR027387 | PFAM:PF00032 |
| PFAM:PF00033 | PIRSF:PIRSF038885 | PFscan:PS51002 | PFscan:PS51003 | PANTHER:PTHR19271 | SUPFAM:SSF81342 |
| SUPFAM:SSF81648 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1A01G112900 | EnsemblPlants:TraesCS1A01G112900.1 | TIGR:cd00284 | TIGR:cd00290 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:115888977..115890171
Molecular Weight (calculated)
41751.9 Da
IEP (calculated)
7.497
GRAVY (calculated)
0.442
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRNQQFSL LRQPIYSTLN QHLIDYSTPS NLSYWWGFGS LAGISMHHTP HVDLAFNSVE HIMRDVEGGW LLRYMHANGA SMFLIVVHLH IFCGLYHASY
101: SSPREFVRCL RVVIFLLMIV TTFIGYVPPW GQMCFWGAIV ITSLASAIPV VGDTIVTWLW GGFSVDNATL NLGASLLHLA ALHQYGSNNP LGVHSEMDKI
201: ASYPYFYVKD LVGRVASAIF FPFGFFAPNI LGHPDNDIPA NPRPTTPHIV PEWYFLPIHA ILHSIPGKAG GVAAIAPVFI SLLALPFFKE MYVCSSSFRP
301: IHQGIFWLLL ADCLLVGWIG CQPVEAPFVT IGQIPTAFFF LFFAITPIPG RVGRGIPKYY TDETHRTLFS FWP
101: SSPREFVRCL RVVIFLLMIV TTFIGYVPPW GQMCFWGAIV ITSLASAIPV VGDTIVTWLW GGFSVDNATL NLGASLLHLA ALHQYGSNNP LGVHSEMDKI
201: ASYPYFYVKD LVGRVASAIF FPFGFFAPNI LGHPDNDIPA NPRPTTPHIV PEWYFLPIHA ILHSIPGKAG GVAAIAPVFI SLLALPFFKE MYVCSSSFRP
301: IHQGIFWLLL ADCLLVGWIG CQPVEAPFVT IGQIPTAFFF LFFAITPIPG RVGRGIPKYY TDETHRTLFS FWP
001: MTIRNQRFSL LKQPISSTLN QHLVDYPTPS NLSYWWGFGP LAGICLVIQI VTGVFLAMHY TPHVDLAFNS VEHIMRDVEG GWLLRYMHAN GASMFLIVVY
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
101: LHIFRGLYHA SYSSPREFVW CLGVVIFLLM IVTAFIGYVL PWGQMSFWGA TVITSLASAI PVVGDTIVTW LWGGFSVDNA TLNRFFSLHH LLPFILVGAS
201: LLHLAALHQY GSNNPLGVHS EMDKIAFYPY FYVKDLVGWV AFAIFFSIWI FYAPNVLGHP DNYIPANPMS TPPHIVPEWY FLPIHAILRS IPDKAGGVAA
301: IAPVFICLLA LPFFKSMYVR SSSFRPIHQG MFWLLLADCL LLGWIGCQPV EAPFVTIGQI SPLVFFLFFA ITPILGRVGR GIPNSYTDET DHT
Arabidopsis Description
Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [Source:TAIR;Acc:AT2G07727]
SUBAcon: [mitochondrion,plasma membrane]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.