Factsheet for TraesCS1A01G130200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	TraesCS4A01G319000.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5B01G560400.1	AT4G22890.1	18243102
ATCG00720.1	TraesCS5D01G569800.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71257	Canola	cytosol, plastid, vacuole	53.85	78.57
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	60.14	74.14
Solyc01g007530.2.1	Tomato	plastid	85.31	57.28
CAA33977	Rice	plasma membrane	84.62	56.28
ATCG00720.1	Thale cress	plasma membrane	83.92	55.81
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	85.31	52.59
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	84.62	52.16
GRMZM5G800780_P01	Maize	plastid	84.62	52.16
TraesCS6A01G192500.1	Wheat	plasma membrane	84.62	52.16
TraesCS5D01G221600.1	Wheat	plasma membrane	82.52	51.98
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	27.97	45.98
GSMUA_AchrUn_...	Banana	mitochondrion	17.48	25.77
TraesCS3A01G188100.1	Wheat	peroxisome, plasma membrane, vacuole	25.87	21.14
TraesCS5A01G430300.1	Wheat	plasma membrane	20.98	15.15
Solyc01g007540.2.1	Tomato	plastid	13.99	14.39
TraesCS2A01G266300.1	Wheat	plasma membrane	18.18	13.33
TraesCS5A01G502900.1	Wheat	plasma membrane	17.48	12.82
TraesCS7A01G237900.1	Wheat	mitochondrion	23.78	9.69
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	4.2	8.7
TraesCS4A01G150300.1	Wheat	mitochondrion, plasma membrane	23.78	8.15
TraesCS1A01G112900.1	Wheat	mitochondrion	20.28	7.77

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	InterPro:IPR005797
InterPro:IPR027387	PFAM:PF00033	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G130200	EnsemblPlants:TraesCS1A01G130200.1	TIGR:cd00284	:	:

Description

No Description!

Coordinates

chr1A:-:168447538..168447969

Molecular Weight (calculated)

15945.1 Da

IEP (calculated)

10.683

GRAVY (calculated)

0.676

Length

143 amino acids

Sequence
(BLAST)

001: MTEANFGWLI RSVHRWSASM MVLMMILHVF RVYLTGGFKK PRELTWVTGV VLAILTASFG VTGYSFPWDQ IGYWAVKIVI GVPDAIPVIG SPLVELLRGS
101: ASVGQSTLTR FYSLHTFVLP LLTAVFMLMH FPMIRKQGIS GPL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.