CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 4
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG34948
KXG37086

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	KXG34948	AT4G22890.1	18243102
ATCG00720.1	KXG37086	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G800780_P01	Maize	plastid	100.0	100.0
AGP50784	Barley	plastid	98.28	98.28
HORVU6Hr1G049420.1	Barley	mitochondrion	98.28	98.28
CAA33977	Rice	plasma membrane	90.95	98.14
Solyc01g007530.2.1	Tomato	plastid	90.09	98.12
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	97.84	97.84
TraesCS1D01G183000.1	Wheat	plastid	97.41	97.41
ATCG00720.1	Thale cress	plasma membrane	90.09	97.21
TraesCS6A01G192500.1	Wheat	plasma membrane	95.69	95.69
TraesCS5D01G221600.1	Wheat	plasma membrane	93.53	95.59
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.69	91.38
TraesCS1A01G130200.1	Wheat	mitochondrion	52.16	84.62
CDX71257	Canola	cytosol, plastid, vacuole	34.48	81.63
HORVU2Hr1G062090.1	Barley	plasma membrane	77.16	77.16
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	25.0	66.67
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	18.97	63.77
GSMUA_AchrUn_...	Banana	mitochondrion	15.52	37.11
Solyc01g007540.2.1	Tomato	plastid	7.33	12.23

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	UniProt:C5XL99	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	EnsemblPlants:EES02990	ProteinID:EES02990	ProteinID:EES02990.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006122	GO:GO:0006139
GO:GO:0006810	GO:GO:0008121	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
GO:GO:0045275	GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	GO:GO:1902600	InterPro:IPR005797
InterPro:IPR027387	ProteinID:KXG18809.1	HAMAP:MF_00633	PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002
PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	EnsemblPlantsGene:SORBI_3003G168700	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI0000090E58
RefSeq:XP_002457870.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:28850092..28850790

Molecular Weight (calculated)

25965.2 Da

IEP (calculated)

9.206

GRAVY (calculated)

0.564

Length

232 amino acids

Sequence
(BLAST)

001: MKFSYTVLGG GVGLVTYLNK VYDWFEERLE IQAIADDITS KYVPPHVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPEAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.