CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 15682463
plastid: 16758444
plastid: 21440687

msms PMID: 16758444 doi

B Granvogl, V Reisinger, LA Eichacker

Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.

msms PMID: 15682463 doi

C Ciambella, P Roepstorff, EM Aro, L Zolla

Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049420.1	Barley	mitochondrion	100.0	100.0
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	99.14	99.14
CAA33977	Rice	plasma membrane	91.38	98.6
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	98.28	98.28
GRMZM5G800780_P01	Maize	plastid	98.28	98.28
ATCG00720.1	Thale cress	plasma membrane	90.52	97.67
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	46.12	92.24
CDX71257	Canola	cytosol, plastid, vacuole	34.91	82.65
HORVU0Hr1G037920.1	Barley	plasma membrane	62.07	79.56
HORVU2Hr1G062090.1	Barley	plasma membrane	77.59	77.59
HORVU7Hr1G052180.1	Barley	plastid	53.45	72.09
HORVU1Hr1G063040.1	Barley	plastid	53.45	72.09
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	38.36	71.2
HORVU1Hr1G045710.1	Barley	extracellular	11.21	36.11
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	21.12	19.37
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	21.98	17.96
HORVU3Hr1G045040.1	Barley	cytosol	15.95	17.45
HORVU1Hr1G009360.1	Barley	plasma membrane	21.98	17.17
HORVU7Hr1G044370.1	Barley	plasma membrane	21.55	16.84
HORVU3Hr1G040840.1	Barley	plasma membrane	19.4	13.2
BAV58143	Barley	mitochondrion, plasma membrane	21.98	12.81
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	7.33	12.23
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	7.33	12.23

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	EnsemblPlants:AGP50784	EnsemblPlantsGene:AGP50784	ProteinID:AGP50784	ProteinID:AGP50784.1
ProteinID:AMA20275.1	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
GO:GO:0046872	GO:GO:0055114	InterPro:IPR005797	InterPro:IPR027387	ENA:KC912687.1:CDS:72000..72698	HAMAP:MF_00633
PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	GO:S4YYM1
UniProt:S4YYM1	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI000008FAF0	:	:

Description

petBcytochrome b6

Coordinates

chrPt:+:72000..72698

Molecular Weight (calculated)

26079.3 Da

IEP (calculated)

9.589

GRAVY (calculated)

0.499

Length

232 amino acids

Sequence
(BLAST)

001: MKFSYTALRG GRGLVTYLNK VYDWFEERLE IQAIADDITS KYVPPHVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.