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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
ATCG00720.1 Thale cress plasma membrane 99.07 99.07
Solyc01g007530.2.1 Tomato plastid 97.21 98.12
KRH75043 Soybean endoplasmic reticulum, mitochondrion, plastid, vacuole 49.77 92.24
HORVU6Hr1G049420.1 Barley mitochondrion 98.6 91.38
AGP50784 Barley plastid 98.6 91.38
GRMZM5G800780_P01 Maize plastid 98.14 90.95
HORVU5Hr1G065020.1 Barley golgi, mitochondrion, plasma membrane 98.14 90.95
EES02990 Sorghum cytosol, endoplasmic reticulum, plasma membrane 98.14 90.95
TraesCS5D01G221600.1 Wheat plasma membrane 95.81 90.75
TraesCS1D01G183000.1 Wheat plastid 97.67 90.52
TraesCS6A01G192500.1 Wheat plasma membrane 95.81 88.79
TraesCS1A01G130200.1 Wheat mitochondrion 56.28 84.62
CDX71257 Canola cytosol, plastid, vacuole 38.14 83.67
HORVU2Hr1G062090.1 Barley plasma membrane 82.33 76.29
PGSC0003DMT400049986 Potato cytosol, extracellular, golgi 27.44 67.82
Solyc07g032450.1.1 Tomato plasma membrane, plastid, vacuole 20.47 63.77
GSMUA_AchrUn_... Banana mitochondrion 16.74 37.11
BAC19890 Rice mitochondrion 23.72 12.85
Solyc01g007540.2.1 Tomato plastid 7.91 12.23
Protein Annotations
MapMan:1.1.2.2Gene3D:1.20.810.10EntrezGene:29141401EntrezGene:3131403ProteinID:AAA85374.1ProteinID:AAA85375.1
EMBL:AP003280EMBL:AY522330EnsemblPlants:CAA33977EnsemblPlantsGene:CAA33977ProteinID:CAA33977ProteinID:CAA33977.1
InterPro:Cyt_B6_PetBInterPro:Cyt_b/b6_NInterPro:Cytb/b6-like_sfInterPro:Di-haem_cyt_TMGO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005506GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0006091GO:GO:0008150GO:GO:0008152GO:GO:0009055GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016491GO:GO:0020037GO:GO:0022900GO:GO:0022904GO:GO:0045158
GO:GO:0046872GO:GO:0055114InterPro:IPR005797InterPro:IPR027387HAMAP:MF_00633RefSeq:NP_039415.1
UniProt:P12123PFAM:PF00033PIRSF:PIRSF000032PFscan:PS51002PANTHER:PTHR19271PANTHER:PTHR19271:SF8
Reactome:R-HSA-611105SUPFAM:SSF81342TMHMM:TMhelixUniParc:UPI00001288D3RefSeq:YP_009305333.1:
Description
petBcytochrome B6
Coordinates
chrPt:+:71232..72690
Molecular Weight (calculated)
24184.0 Da
IEP (calculated)
8.984
GRAVY (calculated)
0.570
Length
215 amino acids
Sequence
(BLAST)
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFSSVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLAVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Arabidopsis Description
PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.