Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os03t0857400-01 | |
Os08t0310500-00 | |
Os08t0526300-02 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
ATCG00720.1 | Os03t0857400-01 | AT4G22890.1 | 18243102 |
ATCG00720.1 | Os08t0310500-00 | AT4G22890.1 | 18243102 |
ATCG00720.1 | Os08t0526300-02 | AT4G22890.1 | 18243102 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
ATCG00720.1 | Thale cress | plasma membrane | 99.07 | 99.07 |
Solyc01g007530.2.1 | Tomato | plastid | 97.21 | 98.12 |
KRH75043 | Soybean | endoplasmic reticulum, mitochondrion, plastid, vacuole | 49.77 | 92.24 |
HORVU6Hr1G049420.1 | Barley | mitochondrion | 98.6 | 91.38 |
AGP50784 | Barley | plastid | 98.6 | 91.38 |
GRMZM5G800780_P01 | Maize | plastid | 98.14 | 90.95 |
HORVU5Hr1G065020.1 | Barley | golgi, mitochondrion, plasma membrane | 98.14 | 90.95 |
EES02990 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 98.14 | 90.95 |
TraesCS5D01G221600.1 | Wheat | plasma membrane | 95.81 | 90.75 |
TraesCS1D01G183000.1 | Wheat | plastid | 97.67 | 90.52 |
TraesCS6A01G192500.1 | Wheat | plasma membrane | 95.81 | 88.79 |
TraesCS1A01G130200.1 | Wheat | mitochondrion | 56.28 | 84.62 |
CDX71257 | Canola | cytosol, plastid, vacuole | 38.14 | 83.67 |
HORVU2Hr1G062090.1 | Barley | plasma membrane | 82.33 | 76.29 |
PGSC0003DMT400049986 | Potato | cytosol, extracellular, golgi | 27.44 | 67.82 |
Solyc07g032450.1.1 | Tomato | plasma membrane, plastid, vacuole | 20.47 | 63.77 |
GSMUA_AchrUn_... | Banana | mitochondrion | 16.74 | 37.11 |
BAC19890 | Rice | mitochondrion | 23.72 | 12.85 |
Solyc01g007540.2.1 | Tomato | plastid | 7.91 | 12.23 |
Protein Annotations
MapMan:1.1.2.2 | Gene3D:1.20.810.10 | EntrezGene:29141401 | EntrezGene:3131403 | ProteinID:AAA85374.1 | ProteinID:AAA85375.1 |
EMBL:AP003280 | EMBL:AY522330 | EnsemblPlants:CAA33977 | EnsemblPlantsGene:CAA33977 | ProteinID:CAA33977 | ProteinID:CAA33977.1 |
InterPro:Cyt_B6_PetB | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Di-haem_cyt_TM | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005739 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 |
GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0016491 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0022904 | GO:GO:0045158 |
GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR005797 | InterPro:IPR027387 | HAMAP:MF_00633 | RefSeq:NP_039415.1 |
UniProt:P12123 | PFAM:PF00033 | PIRSF:PIRSF000032 | PFscan:PS51002 | PANTHER:PTHR19271 | PANTHER:PTHR19271:SF8 |
Reactome:R-HSA-611105 | SUPFAM:SSF81342 | TMHMM:TMhelix | UniParc:UPI00001288D3 | RefSeq:YP_009305333.1 | : |
Description
petBcytochrome B6
Coordinates
chrPt:+:71232..72690
Molecular Weight (calculated)
24184.0 Da
IEP (calculated)
8.984
GRAVY (calculated)
0.570
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFSSVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLAVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
101: VFRVYLTGGF KKPRELTWVT GVVLAVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Arabidopsis Description
PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.