CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89050
EER93246
EES02990
EES04249
EES13198
EES13199
KXG24178

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	EER89050	AT1G20020.1	18243102
AT4G22890.1	EES04249	AT1G20020.1	18243102
AT4G22890.1	EES13198	AT1G60950.1	18243102
AT4G22890.1	EES13199	AT1G60950.1	18243102
AT4G22890.1	KXG24178	AT1G60950.1	18243102
AT4G22890.1	EER93246	AT4G02770.1	18243102
AT4G22890.1	EER89050	AT5G66190.1	18243102
AT4G22890.1	EES04249	AT5G66190.1	18243102
AT4G22890.1	EES02990	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034904_P001	Maize	plastid	51.72	91.7
Zm00001d034900_P001	Maize	plastid	67.24	84.78
Os03t0857400-01	Rice	plasma membrane	57.39	71.91
TraesCS5B01G560400.1	Wheat	plastid	55.91	69.85
TraesCS5D01G569800.1	Wheat	plastid	55.66	69.75
TraesCS4A01G319000.1	Wheat	plastid	55.66	69.54
HORVU5Hr1G124210.2	Barley	plastid	55.42	69.02
KRH26378	Soybean	plasma membrane	25.12	68.92
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	47.54	68.44
GSMUA_Achr2P12240_001	Banana	plastid	50.74	65.19
KRH77457	Soybean	plastid	49.26	63.29
Bra013653.1-P	Field mustard	plastid	49.26	62.7
CDY41285	Canola	plastid	49.26	62.7
PGSC0003DMT400032525	Potato	plastid	49.01	62.38
CDY10819	Canola	plastid	49.01	62.38
KRH57278	Soybean	plastid	49.26	62.31
KXG34948	Sorghum	plastid	50.74	62.05
AT4G22890.1	Thale cress	plastid	49.26	61.73
PGSC0003DMT400058521	Potato	plastid	48.52	61.56
VIT_02s0025g04710.t01	Wine grape	plastid	49.26	61.35
CDY68977	Canola	plastid	48.03	60.94
Bra019349.1-P	Field mustard	plastid	48.03	60.94
Solyc08g080050.2.1	Tomato	plastid	46.06	60.71
Bra000757.1-P	Field mustard	plastid	47.78	60.62
CDX94134	Canola	plastid	47.78	60.62
CDX90812	Canola	plastid	47.78	60.62
CDY51552	Canola	plastid	47.78	60.62
KRH04003	Soybean	plastid	49.26	60.24
Solyc08g007770.2.1	Tomato	plastid	45.07	59.61
AT4G11960.1	Thale cress	plastid	45.57	59.11

Protein Annotations

EnsemblPlants:KXG37086	EnsemblPlantsGene:SORBI_3001G005200	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR31032
PANTHER:PTHR31032:SF1	ProteinID:KXG37084.1	ProteinID:KXG37085.1	ProteinID:KXG37086	ProteinID:KXG37086.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002207094	UniProt:A0A1B6QGN6	MapMan:1.1.6.1.2	:	:

Description

hypothetical protein

Coordinates

chr1:+:421333..426344

Molecular Weight (calculated)

44869.7 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.134

Length

406 amino acids

Sequence
(BLAST)

001: MDLLLVPSSS SSTHPIRSRS RRSELLPTNH TLSLSRRSAH PHTTPHLTSP HLTSPHTHSL SPPASSLACS SLSLACLDRN ALGMASEVWL SPASRLPSLS
101: TNAPPRFRSN PPATTTASFF SPRPRPARGA LPLLRVRRRL RATDQQGQVQ EQDDEVVDSN ILPYCNIDRK QKKTLGEMEQ EFLQACQAFY FDQKAIMSSE
201: EFDNLKEELM WEGSSVVMLS EDEQKLLEAS MAYAAGSPIM SDAEFDQLKL KLKTDGSVIV MEGPRCSLRS HKVYSDLNVD YLKMFLLNVP ATTVALGLFF
301: FIDELTGFEI NVFQLPEPFG FIFTWFAALP LILFLAQLLT KAIVQDFIIL KGPCPNCGTE NLSFFGTILS VSSGGTTNKV KCANCSTELE YDSKSRVITL
401: PEASSA

Best Arabidopsis Sequence Match ( AT4G22890.4 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGGDN VDSNVLPYCS INKAEKKTIG EMEQEFLQAL
101: QSFYYDGKAI MSNEEFDNLK EELMWEGSSV VMLSSDEQRF LEASMAYVSG NPILNDEEYD KLKLKLKIDG SDIVSEGPRC SLRSKKVYSD LAVDYFKMLL
201: LNVPATVVAL GLFFFLDDIT GFEITYIMEL PEPYSFIFTW FAAVPVIVYL ALSITKLIIK DFLILKGPCP NCGTENTSFF GTILSISSGG KTNTVKCTNC
301: GTAMVYDSGS RLITLPEGSQ A

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.