CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000757.1-P	Field mustard	plastid	100.0	100.0
CDY51552	Canola	plastid	97.19	97.19
AT4G11960.1	Thale cress	plastid	83.44	85.3
CDX94134	Canola	plastid	79.38	79.38
CDY68977	Canola	plastid	77.19	77.19
CDY41285	Canola	plastid	76.25	76.49
CDY10819	Canola	plastid	75.62	75.86
KRH57278	Soybean	plastid	75.62	75.39
PGSC0003DMT400032525	Potato	plastid	72.5	72.73
VIT_02s0025g04710.t01	Wine grape	plastid	74.06	72.7
KRH04003	Soybean	plastid	75.31	72.59
KRH77457	Soybean	plastid	71.56	72.47
KRH26378	Soybean	plasma membrane	33.12	71.62
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	61.25	69.5
Zm00001d034904_P001	Maize	plastid	49.69	69.43
Solyc08g007770.2.1	Tomato	plastid	66.25	69.06
PGSC0003DMT400058521	Potato	plastid	68.12	68.12
Solyc08g080050.2.1	Tomato	plastid	64.06	66.56
GSMUA_Achr2P12240_001	Banana	plastid	62.5	63.29
Zm00001d034900_P001	Maize	plastid	62.5	62.11
TraesCS5D01G569800.1	Wheat	plastid	62.19	61.42
TraesCS5B01G560400.1	Wheat	plastid	61.88	60.92
Os03t0857400-01	Rice	plasma membrane	61.25	60.49
HORVU5Hr1G124210.2	Barley	plastid	61.56	60.43
TraesCS4A01G319000.1	Wheat	plastid	60.94	60.0
Os08t0526300-02	Rice	plastid	61.56	59.88
Zm00001d019454_P001	Maize	plastid	61.88	59.1
KXG34948	Sorghum	plastid	60.94	58.73
KXG37086	Sorghum	plastid	60.62	47.78
Os08t0310500-00	Rice	plastid	11.25	27.48

Protein Annotations

EnsemblPlants:CDX90812	EnsemblPlantsGene:GSBRNA2T00151521001	GO:A0A078DP99	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:CDX90812
ProteinID:CDX90812.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000253FC90	MapMan:1.1.6.1.2	:

Description

BnaA03g24920D

Coordinates

chrLK031864:-:676189..678838

Molecular Weight (calculated)

35651.9 Da

IEP (calculated)

5.080

GRAVY (calculated)

-0.072

Length

320 amino acids

Sequence
(BLAST)

001: MCSKMAFTLT IPRFHSPVSR KSTTTCSSPP SRTHSAQFSP RRSISLRRRL FLLPVKATTD QSGQVGGEEV DSKILPYCSI NKNEKRSIGE MEQEFLQAMQ
101: SFYYEGKAVM SNEEFDNLKE ELMWEGSSVV MLSSDEQRFL EASMAYVSGN PIMSDEEYDK LKMKLKMDGS EIVCEGPRCS LRSKKVYSDL AVDYFKMFLL
201: NVPATVVALG LFFFLDDLTG FEITYLLELP EPFSFIFTWF AAVPAIVYLA LSLTKLIIRD SLILKGPCPN CGTENTSFFG TILSISNDGS TNNVKCSGCG
301: TAMVYDSSTR LITLPEGGNA

Best Arabidopsis Sequence Match ( AT4G11960.1 )
(BLAST)

001: MAFTLTIPRF SAISRKPITC SSSRTQCPAP FTHGRSISLR RRLTLLPLKA STDQSGQVGG EEVDSKILPY CSINKNEKRT IGEMEQEFLQ AMQSFYYEGK
101: AIMSNEEFDN LKEELMWEGS SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY SDLAIDYFKM FLLNVPATVV
201: ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS
301: GSRLITLPEG GKA

Arabidopsis Description

PGRL1BPGR5-like protein 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.