Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 4
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus, plasma membrane
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g007530.2.1
Solyc01g007540.2.1
Solyc01g103920.2.1
Solyc02g062130.2.1
Solyc02g083810.2.1
Solyc06g054260.1.1
Solyc07g032450.1.1
Solyc10g044520.1.1
Solyc10g075160.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G22890.1 Solyc01g103920.2.1 AT1G60950.1 18243102
AT4G22890.1 Solyc10g044520.1.1 AT1G60950.1 18243102
AT4G22890.1 Solyc10g075160.1.1 AT1G60950.1 18243102
AT4G22890.1 Solyc06g054260.1.1 AT4G02770.1 18243102
AT4G22890.1 Solyc02g062130.2.1 AT5G66190.1 18243102
AT4G22890.1 Solyc02g083810.2.1 AT5G66190.1 18243102
AT4G22890.1 Solyc01g007530.2.1 ATCG00720.1 18243102
AT4G22890.1 Solyc01g007540.2.1 ATCG00720.1 18243102
AT4G22890.1 Solyc07g032450.1.1 ATCG00720.1 18243102
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032525 Potato plastid 93.16 89.66
Solyc08g080050.2.1 Tomato plastid 79.48 79.22
GSMUA_Achr4P28830_001 Banana cytosol, peroxisome, plasma membrane 63.84 69.5
VIT_02s0025g04710.t01 Wine grape plastid 71.34 67.18
Zm00001d034904_P001 Maize plastid 49.84 66.81
KRH57278 Soybean plastid 69.71 66.67
CDX90812 Canola plastid 69.06 66.25
Bra000757.1-P Field mustard plastid 69.06 66.25
CDY51552 Canola plastid 68.73 65.94
KRH77457 Soybean plastid 67.75 65.82
AT4G11960.1 Thale cress plastid 66.45 65.18
KRH04003 Soybean plastid 70.36 65.06
CDY68977 Canola plastid 67.75 65.0
Bra019349.1-P Field mustard plastid 67.75 65.0
GSMUA_Achr2P12240_001 Banana plastid 66.78 64.87
CDX94134 Canola plastid 67.1 64.38
CDY10819 Canola plastid 66.12 63.64
CDY41285 Canola plastid 66.12 63.64
Bra013653.1-P Field mustard plastid 66.12 63.64
AT4G22890.1 Thale cress plastid 66.78 63.27
KRH26378 Soybean plasma membrane 30.29 62.84
Os03t0857400-01 Rice plasma membrane 64.17 60.8
Os08t0526300-02 Rice plastid 63.52 59.27
KXG34948 Sorghum plastid 63.19 58.43
Zm00001d019454_P001 Maize plastid 63.52 58.21
Zm00001d034900_P001 Maize plastid 60.91 58.07
TraesCS5D01G569800.1 Wheat plastid 60.26 57.1
TraesCS5B01G560400.1 Wheat plastid 59.93 56.62
HORVU5Hr1G124210.2 Barley plastid 59.61 56.13
TraesCS4A01G319000.1 Wheat plastid 59.28 56.0
KXG37086 Sorghum plastid 59.61 45.07
Os08t0310500-00 Rice plastid 10.1 23.66
Protein Annotations
EnsemblPlants:Solyc08g007770.2.1EnsemblPlantsGene:Solyc08g007770.2GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR31032
PANTHER:PTHR31032:SF1SEG:segTMHMM:TMhelixUniParc:UPI000276C852UniProt:K4CIR4MapMan:1.1.6.1.2
Description
No Description!
Coordinates
chr8:+:2287091..2290348
Molecular Weight (calculated)
34703.1 Da
IEP (calculated)
7.897
GRAVY (calculated)
-0.048
Length
307 amino acids
Sequence
(BLAST)
001: MATKFGFTIT TSSRLFHATF RKKTIFSPNS VSPLINFGGR KLSIRRRLLV LSPKATADQP GQLREDEIED SKILQYCSID GKGKKSLGEM EQEFLQALQS
101: FYYEGKAMMS NEEFDNLKEE LMWEGSSVVM LSPDEQRFLE ASMAYVSGNP IMTDKEYDKL KMKLKRDGSD IVVEGPRCSL RSRKVYSDLS VDYLKMFLLN
201: VPAAVVALGL FFFLDDLTGF EITYLLELPE PFSFIFTWFA ALPLILWLSF TITNAIVKDF LILKGPCPNC GTENTSFFGT ILSVSNGGSS NKVKFVGQTW
301: SMIQKRV
Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)
001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA
Arabidopsis Description
PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.