Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51552 | Canola | plastid | 85.94 | 84.06 |
| Bra000757.1-P | Field mustard | plastid | 85.3 | 83.44 |
| CDX90812 | Canola | plastid | 85.3 | 83.44 |
| AT4G22890.1 | Thale cress | plastid | 76.68 | 74.07 |
| KRH57278 | Soybean | plastid | 72.52 | 70.72 |
| GSMUA_Achr4P28830_001 | Banana | cytosol, peroxisome, plasma membrane | 63.58 | 70.57 |
| KRH04003 | Soybean | plastid | 74.44 | 70.18 |
| PGSC0003DMT400032525 | Potato | plastid | 70.93 | 69.59 |
| VIT_02s0025g04710.t01 | Wine grape | plastid | 72.2 | 69.33 |
| KRH26378 | Soybean | plasma membrane | 32.59 | 68.92 |
| KRH77457 | Soybean | plastid | 69.33 | 68.67 |
| Zm00001d034904_P001 | Maize | plastid | 50.16 | 68.56 |
| Solyc08g007770.2.1 | Tomato | plastid | 65.18 | 66.45 |
| PGSC0003DMT400058521 | Potato | plastid | 67.41 | 65.94 |
| Solyc08g080050.2.1 | Tomato | plastid | 64.22 | 65.26 |
| GSMUA_Achr2P12240_001 | Banana | plastid | 62.62 | 62.03 |
| Zm00001d034900_P001 | Maize | plastid | 61.34 | 59.63 |
| Os08t0526300-02 | Rice | plastid | 61.98 | 58.97 |
| Os03t0857400-01 | Rice | plasma membrane | 61.02 | 58.95 |
| KXG34948 | Sorghum | plastid | 62.3 | 58.73 |
| TraesCS5D01G569800.1 | Wheat | plastid | 60.7 | 58.64 |
| Zm00001d019454_P001 | Maize | plastid | 62.62 | 58.51 |
| TraesCS5B01G560400.1 | Wheat | plastid | 60.7 | 58.46 |
| HORVU5Hr1G124210.2 | Barley | plastid | 60.38 | 57.98 |
| TraesCS4A01G319000.1 | Wheat | plastid | 59.42 | 57.23 |
| KXG37086 | Sorghum | plastid | 59.11 | 45.57 |
| Os08t0310500-00 | Rice | plastid | 10.22 | 24.43 |
Protein Annotations
| MapMan:1.1.6.1.2 | EntrezGene:826803 | ProteinID:AEE83074.1 | EMBL:AK117721 | ArrayExpress:AT4G11960 | EnsemblPlantsGene:AT4G11960 |
| RefSeq:AT4G11960 | TAIR:AT4G11960 | RefSeq:AT4G11960-TAIR-G | EnsemblPlants:AT4G11960.1 | TAIR:AT4G11960.1 | EMBL:BT005305 |
| ProteinID:CAB40937.1 | ProteinID:CAB78239.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009773 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055114 | RefSeq:NP_192933.2 | Symbol:PGRL1B | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31032 | PANTHER:PTHR31032:SF1 | UniProt:Q8GYC7 |
| TMHMM:TMhelix | UniParc:UPI000000C5DC | SEG:seg | : | : | : |
Description
PGRL1BPGR5-like protein 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC7]
Coordinates
chr4:-:7174886..7177888
Molecular Weight (calculated)
34911.2 Da
IEP (calculated)
4.764
GRAVY (calculated)
-0.010
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFTLTIPRF SAISRKPITC SSSRTQCPAP FTHGRSISLR RRLTLLPLKA STDQSGQVGG EEVDSKILPY CSINKNEKRT IGEMEQEFLQ AMQSFYYEGK
101: AIMSNEEFDN LKEELMWEGS SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY SDLAIDYFKM FLLNVPATVV
201: ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS
301: GSRLITLPEG GKA
101: AIMSNEEFDN LKEELMWEGS SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY SDLAIDYFKM FLLNVPATVV
201: ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS
301: GSRLITLPEG GKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.