CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91274
KRH08061
KRH26360
KRH28804
KRH35533
KRH69775
KRH75043

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	KRH26360	AT1G60950.1	18243102
AT4G22890.1	KRG91274	AT4G02770.1	18243102
AT4G22890.1	KRH35533	AT4G02770.1	18243102
AT4G22890.1	KRH08061	AT5G66190.1	18243102
AT4G22890.1	KRH28804	AT5G66190.1	18243102
AT4G22890.1	KRH69775	AT5G66190.1	18243102
AT4G22890.1	KRH75043	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04003	Soybean	plastid	87.54	84.64
KRH77457	Soybean	plastid	81.31	82.59
KRH26378	Soybean	plasma membrane	34.89	75.68
Bra000757.1-P	Field mustard	plastid	75.39	75.62
CDX90812	Canola	plastid	75.39	75.62
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	66.36	75.53
CDY51552	Canola	plastid	74.77	75.0
Zm00001d034904_P001	Maize	plastid	52.02	72.93
VIT_02s0025g04710.t01	Wine grape	plastid	73.83	72.7
AT4G11960.1	Thale cress	plastid	70.72	72.52
CDY68977	Canola	plastid	71.96	72.19
CDX94134	Canola	plastid	71.96	72.19
Bra019349.1-P	Field mustard	plastid	71.96	72.19
PGSC0003DMT400032525	Potato	plastid	71.65	72.1
CDY41285	Canola	plastid	70.41	70.85
Bra013653.1-P	Field mustard	plastid	70.41	70.85
CDY10819	Canola	plastid	70.09	70.53
AT4G22890.1	Thale cress	plastid	71.03	70.37
Solyc08g007770.2.1	Tomato	plastid	66.67	69.71
PGSC0003DMT400058521	Potato	plastid	68.85	69.06
Solyc08g080050.2.1	Tomato	plastid	66.04	68.83
GSMUA_Achr2P12240_001	Banana	plastid	67.6	68.67
Zm00001d019454_P001	Maize	plastid	67.29	64.48
KXG34948	Sorghum	plastid	66.67	64.46
Zm00001d034900_P001	Maize	plastid	64.49	64.29
Os08t0526300-02	Rice	plastid	64.8	63.22
Os03t0857400-01	Rice	plasma membrane	63.55	62.96
TraesCS5D01G569800.1	Wheat	plastid	61.68	61.11
HORVU5Hr1G124210.2	Barley	plastid	61.37	60.43
TraesCS5B01G560400.1	Wheat	plastid	61.06	60.31
TraesCS4A01G319000.1	Wheat	plastid	60.75	60.0
KXG37086	Sorghum	plastid	62.31	49.26
Os08t0310500-00	Rice	plastid	11.21	27.48

Protein Annotations

EMBL:ACUP02002823	EnsemblPlants:KRH57278	EnsemblPlantsGene:GLYMA_05G051300	EntrezGene:100810598	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:KRH57278	ProteinID:KRH57278.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000233957D	UniProt:I1K0F7	MapMan:1.1.6.1.2	:	:

Description

hypothetical protein

Coordinates

chr5:-:4587268..4591854

Molecular Weight (calculated)

35661.0 Da

IEP (calculated)

4.473

GRAVY (calculated)

0.052

Length

321 amino acids

Sequence
(BLAST)

001: MFTASKLAFT LTPPRPCTAP LTPISSASGV HLIQFNGRHL CLRQRLFLLS PMATADQQGK VEEFEDDSNT VDSKILPYCS IDKKEKKSIG ELEQEFLQAL
101: QAFYYEGKAI MSNEEFDNLK EELMWEGSSV VMLSSDEQKF LEASMAYVSG KPIMSDKEFD ELKLRLKIEG SEIVAEGPRC SLRSRKVYSD LSVDYLKMLL
201: LNVPATVIAL GLFFFLDDLT GFEITYLLEL PEPFSFIFTW FAAVPLIVWI ALSLTNAIVK DFVILKGPCP NCGTENTSFF GTILSISNGG STNTVKCSNC
301: GTAMEYDSTT RLITLPEGSN A

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.