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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
 plastid: 20089766
plastid: 22065420
plastid: 23198870
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
GRMZM5G800780_P01
GRMZM5G884960_P01
Zm00001d011833_P001
Zm00001d013039_P001
Zm00001d034543_P001
Zm00001d035001_P001
Zm00001d035002_P001
Zm00001d035003_P001
Zm00001d042049_P001
Zm00001d045575_P001
Zm00001d049732_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G22890.1 Zm00001d011833_P001 AT1G20020.1 18243102
AT4G22890.1 Zm00001d042049_P001 AT1G20020.1 18243102
AT4G22890.1 Zm00001d045575_P001 AT1G20020.1 18243102
AT4G22890.1 Zm00001d035001_P001 AT1G60950.1 18243102
AT4G22890.1 Zm00001d035002_P001 AT1G60950.1 18243102
AT4G22890.1 Zm00001d035003_P001 AT1G60950.1 18243102
AT4G22890.1 Zm00001d049732_P001 AT1G60950.1 18243102
AT4G22890.1 Zm00001d013039_P001 AT4G02770.1 18243102
AT4G22890.1 Zm00001d034543_P001 AT4G02770.1 18243102
AT4G22890.1 Zm00001d011833_P001 AT5G66190.1 18243102
AT4G22890.1 Zm00001d042049_P001 AT5G66190.1 18243102
AT4G22890.1 Zm00001d045575_P001 AT5G66190.1 18243102
AT4G22890.1 GRMZM5G800780_P01 ATCG00720.1 18243102
AT4G22890.1 GRMZM5G884960_P01 ATCG00720.1 18243102
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH26378 Soybean plasma membrane 44.1 68.24
Zm00001d034900_P001 Maize plastid 95.2 67.7
GSMUA_Achr4P28830_001 Banana cytosol, peroxisome, plasma membrane 73.36 59.57
Os03t0857400-01 Rice plasma membrane 82.97 58.64
TraesCS4A01G319000.1 Wheat plastid 78.17 55.08
TraesCS5D01G569800.1 Wheat plastid 77.73 54.94
TraesCS5B01G560400.1 Wheat plastid 77.73 54.77
HORVU5Hr1G124210.2 Barley plastid 77.73 54.6
KRH77457 Soybean plastid 75.11 54.43
GSMUA_Achr2P12240_001 Banana plastid 73.36 53.16
Bra013653.1-P Field mustard plastid 72.49 52.04
CDY10819 Canola plastid 72.49 52.04
CDY41285 Canola plastid 72.49 52.04
PGSC0003DMT400032525 Potato plastid 72.49 52.04
KRH57278 Soybean plastid 72.93 52.02
KXG37086 Sorghum plastid 91.7 51.72
CDY68977 Canola plastid 71.62 51.25
Bra019349.1-P Field mustard plastid 71.62 51.25
AT4G22890.1 Thale cress plastid 72.49 51.23
PGSC0003DMT400058521 Potato plastid 71.18 50.94
CDX94134 Canola plastid 71.18 50.94
KRH04003 Soybean plastid 72.93 50.3
AT4G11960.1 Thale cress plastid 68.56 50.16
Solyc08g007770.2.1 Tomato plastid 66.81 49.84
Bra000757.1-P Field mustard plastid 69.43 49.69
CDY51552 Canola plastid 69.43 49.69
CDX90812 Canola plastid 69.43 49.69
Solyc08g080050.2.1 Tomato plastid 66.81 49.68
VIT_02s0025g04710.t01 Wine grape plastid 70.31 49.39
Zm00001d019454_P001 Maize plastid 71.18 48.66
Protein Annotations
EnsemblPlants:Zm00001d034904_P001EnsemblPlants:Zm00001d034904_T001EnsemblPlantsGene:Zm00001d034904GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR31032PANTHER:PTHR31032:SF1ProteinID:ONM11719.1TMHMM:TMhelixUniParc:UPI0008456BFEUniProt:A0A1D6LCA2
MapMan:1.1.6.1.2:::::
Description
PGR5-like protein 1B chloroplastic
Coordinates
chr1:-:305196308..305215804
Molecular Weight (calculated)
25705.8 Da
IEP (calculated)
4.341
GRAVY (calculated)
0.032
Length
229 amino acids
Sequence
(BLAST)
001: MASEVQEQDD EVVDRNILPY CSIDRKQKKT LGEMEQEFLQ ALQAFYYDQK AIMSNEEFDN LKEELMWEGS SVVIAKQTNS VIVKEGPRCS LRSHKVYSDL
101: NVDYIKMFLL NVPATTVALG LFFFIDELTG FEINVFQLPE PFGFIFTWFA ALPLILFLAQ SLTKAIVQDF LILKGPCPNC GTENLSFFGT ILSVSSGGTT
201: NKVKCANCSA ELEYDSKSRV ITLPEASNA
Best Arabidopsis Sequence Match ( AT4G11960.1 )
(BLAST)
001: MAFTLTIPRF SAISRKPITC SSSRTQCPAP FTHGRSISLR RRLTLLPLKA STDQSGQVGG EEVDSKILPY CSINKNEKRT IGEMEQEFLQ AMQSFYYEGK
101: AIMSNEEFDN LKEELMWEGS SVVMLSSDEQ RFLEASMAYV SGNPILSDEE YDKLKMKLKM DGSEIVCEGP RCSLRSKKVY SDLAIDYFKM FLLNVPATVV
201: ALGLFFFLDD ITGFEITYLL ELPEPFSFIF TWFAAVPAIV YLALSLTKLI LKDFLILKGP CPNCGTENVS FFGTILSIPN DSNTNNVKCS GCGTEMVYDS
301: GSRLITLPEG GKA
Arabidopsis Description
PGRL1BPGR5-like protein 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.