Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
extracellular: 22192489 plastid: 23198870 |
msms PMID:
22192489
doi
Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034543_P001 | Maize | plastid | 73.31 | 86.93 |
| EER93246 | Sorghum | plastid | 68.22 | 80.1 |
| TraesCS5D01G468400.1 | Wheat | plastid | 67.8 | 78.43 |
| TraesCS5B01G466700.1 | Wheat | plastid | 67.8 | 78.05 |
| TraesCS5A01G457500.1 | Wheat | plastid | 67.8 | 78.05 |
| Os08t0560900-01 | Rice | extracellular, plastid | 66.53 | 77.34 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 64.83 | 75.0 |
| KRG91274 | Soybean | nucleus, plastid | 62.71 | 72.91 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 63.56 | 72.46 |
| Solyc06g054260.1.1 | Tomato | plastid | 63.14 | 71.63 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 62.29 | 71.01 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 61.86 | 70.53 |
| KRH35533 | Soybean | plastid | 62.71 | 70.48 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 60.59 | 70.1 |
| AT1G03130.1 | Thale cress | plastid | 58.9 | 68.14 |
| AT4G02770.1 | Thale cress | plastid | 58.47 | 66.35 |
| CDY22079 | Canola | plastid | 35.17 | 55.33 |
| Bra036240.1-P | Field mustard | plastid | 58.47 | 49.46 |
| CDY21916 | Canola | plastid | 58.05 | 48.75 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 55.93 | 48.18 |
Protein Annotations
| MapMan:1.1.4.2.4 | Gene3D:3.30.1470.10 | UniProt:A0A1D6GF65 | ProteinID:AQK62213.1 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 |
| GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016020 | PFAM:PF02531 | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 |
| InterPro:PsaD | InterPro:PsaD_sf | SUPFAM:SSF64234 | UniParc:UPI0002211502 | EnsemblPlantsGene:Zm00001d013039 | EnsemblPlants:Zm00001d013039_P001 |
| EnsemblPlants:Zm00001d013039_T001 | SEG:seg | : | : | : | : |
Description
photosystem I subunit d1
Coordinates
chr5:-:3603517..3604227
Molecular Weight (calculated)
25280.5 Da
IEP (calculated)
10.424
GRAVY (calculated)
-0.217
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MLAPPSSIPF HSIPVLAHLA PPSASAHPPR IVMAMATQAS AATRHLVAAA ASAWAPSAKP RQLSSQLALP PSSSRAPAPL RATAGEAVTE EAPKGFVAPQ
101: LDPSTPSPIF GGSTGGLLRK AQVEEFYVIT WVSPKEQVFE MPTGGAAIMR EGPNLLKLAR KEQCLALGTR LRSKYKITYQ FYRVFPNGEV QYLHPKDGVY
201: PEKVNPGREG VGQNFRSIGK NVNPIDVKFT GKSTFD
101: LDPSTPSPIF GGSTGGLLRK AQVEEFYVIT WVSPKEQVFE MPTGGAAIMR EGPNLLKLAR KEQCLALGTR LRSKYKITYQ FYRVFPNGEV QYLHPKDGVY
201: PEKVNPGREG VGQNFRSIGK NVNPIDVKFT GKSTFD
001: MATQAAGIFN SAITTAATSG VKKLHFFSTT HRPKSLSFTK TAIRAEKTDS SAAAAAAPAT KEAPVGFTPP QLDPNTPSPI FAGSTGGLLR KAQVEEFYVI
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL
101: TWNSPKEQIF EMPTGGAAIM REGPNLLKLA RKEQCLALGT RLRSKYKITY QFYRVFPNGE VQYLHPKDGV YPEKANPGRE GVGLNMRSIG KNVSPIEVKF
201: TGKQSYDL
Arabidopsis Description
PSAD1Photosystem I reaction center subunit II-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7H1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.