Factsheet for Zm00001d017284_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d001945_P002
Zm00001d004894_P001
Zm00001d008201_P001
Zm00001d010360_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016277_P002
Zm00001d017284_P001
Zm00001d025871_P001
Zm00001d026540_P002
Zm00001d032683_P001
Zm00001d037691_P003
Zm00001d038784_P001
Zm00001d039267_P005
Zm00001d039513_P001
Zm00001d040541_P001
Zm00001d043515_P002
Zm00001d051172_P001
Zm00001d052595_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Zm00001d001945_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d026540_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d039267_P005	AT1G34310.1	22096563
AT2G28350.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d016277_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d037691_P003	AT3G16500.1	21734647
AT2G28350.1	Zm00001d038784_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039513_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d043515_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039267_P005	AT3G61830.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d016277_P002	AT5G25890.1	22096563
AT2G28350.1	Zm00001d037691_P003	AT5G25890.1	22096563
AT2G28350.1	Zm00001d038784_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d039513_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d043515_P002	AT5G25890.1	22096563
AT4G30080.1	Zm00001d008201_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d040541_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d004894_P001	AT5G38420.1	21798944
AT4G30080.1	Zm00001d052595_P001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05458	Sorghum	nucleus	92.36	92.23
Zm00001d051172_P001	Maize	nucleus	87.98	87.48
Os02t0628600-01	Rice	nucleus	81.19	84.29
TraesCS6A01G222300.1	Wheat	nucleus	72.56	76.34
TraesCS6B01G258800.1	Wheat	mitochondrion	75.67	71.62
HORVU6Hr1G058890.2	Barley	mitochondrion	74.4	69.3
TraesCS6D01G212700.1	Wheat	plastid	74.96	68.92
GSMUA_Achr4P18240_001	Banana	nucleus	55.73	64.91
GSMUA_Achr11P...	Banana	nucleus	53.47	62.58
GSMUA_Achr8P18930_001	Banana	nucleus	50.49	62.3
GSMUA_Achr5P18540_001	Banana	nucleus	44.41	60.5
GSMUA_Achr5P14630_001	Banana	nucleus	47.1	60.44
GSMUA_Achr11P...	Banana	nucleus	45.97	60.07
GSMUA_Achr5P03960_001	Banana	nucleus	47.38	59.93
Zm00001d000358_P001	Maize	nucleus	58.13	58.71
VIT_08s0040g01810.t01	Wine grape	nucleus	51.34	58.27
Solyc09g007810.2.1	Tomato	nucleus	56.15	57.2
Zm00001d014507_P002	Maize	nucleus	58.56	57.1
VIT_13s0019g04380.t01	Wine grape	nucleus	54.74	57.0
VIT_06s0004g02750.t01	Wine grape	nucleus	57.28	56.96
Zm00001d014013_P002	Maize	nucleus	51.77	56.83
Zm00001d032683_P001	Maize	nucleus	54.74	56.83
PGSC0003DMT400055522	Potato	nucleus	55.45	56.65
KRH32480	Soybean	nucleus	55.73	56.29
CDY43553	Canola	nucleus	48.51	56.14
CDX68620	Canola	nucleus	48.66	55.75
KRG95987	Soybean	nucleus	54.31	54.86
KRH22880	Soybean	nucleus	51.63	54.48
Solyc11g069500.1.1	Tomato	nucleus	53.75	54.36
PGSC0003DMT400020874	Potato	nucleus	53.47	54.08
Bra011162.1-P	Field mustard	nucleus	49.36	53.94
KRH26435	Soybean	nucleus	53.32	53.86
AT4G30080.1	Thale cress	nucleus	50.49	53.28
KRH29907	Soybean	nucleus	52.19	52.94
KRH25023	Soybean	nucleus	52.33	52.78
CDY15734	Canola	nucleus	49.93	51.91
KRH34867	Soybean	nucleus	44.84	51.8
Solyc06g075150.2.1	Tomato	nucleus	48.66	51.27
CDY04557	Canola	nucleus	49.65	51.24
AT2G28350.1	Thale cress	nucleus	50.21	51.23
KRG91907	Soybean	nucleus	42.43	50.59
Bra011955.1-P	Field mustard	nucleus	50.35	50.5
PGSC0003DMT400062489	Potato	nucleus	48.09	50.3
Zm00001d003011_P001	Maize	nucleus	14.0	49.25
Bra024109.1-P	Field mustard	nucleus	48.09	48.99
Zm00001d053166_P001	Maize	nucleus	10.18	48.65
Zm00001d025871_P001	Maize	nucleus	40.31	48.47
Solyc10g086130.1.1	Tomato	nucleus	39.18	43.9
CDY46728	Canola	nucleus	50.07	41.94
CDY30172	Canola	nucleus	48.09	40.96
Zm00001d002929_P001	Maize	nucleus	25.74	35.48
Zm00001d030803_P001	Maize	nucleus	16.41	34.12
Zm00001d026687_P001	Maize	nucleus	21.92	33.55
Zm00001d026694_P001	Maize	nucleus	16.55	31.97
Zm00001d030801_P001	Maize	nucleus	19.09	30.27
Zm00001d043922_P001	Maize	nucleus	27.02	26.98
Zm00001d038698_P001	Maize	nucleus	24.61	25.59
Zm00001d006004_P001	Maize	nucleus	11.88	24.93
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	9.76	24.56
Zm00001d043431_P012	Maize	nucleus	23.9	24.42
Zm00001d012731_P010	Maize	nucleus	23.48	24.06
Zm00001d039006_P007	Maize	nucleus	25.74	23.7

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:ADG43142.1	ProteinID:AQK72783.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:D9HNT5	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF37	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI0001DC14E9	EnsemblPlantsGene:Zm00001d017284	EnsemblPlants:Zm00001d017284_P001	EnsemblPlants:Zm00001d017284_T001	SEG:seg

Description

Auxin response factor 16

Coordinates

chr5:+:191690481..191693464

Molecular Weight (calculated)

75369.1 Da

IEP (calculated)

7.096

GRAVY (calculated)

-0.222

Length

707 amino acids

Sequence
(BLAST)

001: MITFADLTEP AAAGAERCVD RQLWLACAGS MCTVPLVGAS VCYFPQGHAE HALGLDGAAD LSAARVPALV PCRVTAVRYM ADPDTDEVFA RIRLVPLRGG
101: EAHAGGLDDD VAAADEQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QNVVAKDVHG TAWKFRHIYR GTPRRHLLTT GWSTFVNQKK
201: LIAGDSIVFL RGDSGDLHVG IRRAKRGFCG AGGGGGDEAP TPGWHHYAGL IRGNVSPCAA AKARGKVRPE DVAEAARLAA AGQSFEVVYY PRASTPEFCV
301: RAAAVRAAMR VQWSPGMRFK MAFETEDSSR ISWFMGTVAG VQVTDPIRWP QSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSSMPAIHLA SFSPPRKKPR
401: IPAYPEFPFE GQLLNPAFPP SPLPHGQQHH HNFLHAHPPS FFPFPDGSAP AAIQGARHAQ FVPSLSDLHL IHLQSSLLYP GLRRPDHVGP TIPIPSGIST
501: DLTIGGAPAR DGVPCALSVG ASKQNPDAVK PAGLVLFGRT ILTEHQMSLS SSGGATSPAA TGNSSLCWTA EKGPNVSEGS GSGSGSGVIQ NSPTGKNTSS
601: ERLPWFGDGS SQQASEPGLE PGQCKVFVES DTVGRNLDLS ALGSFDELYG RLSEMFGVEG AEMRSRVLYR GATGEVRHAG DEPFSDFVKS ARRITILTDA
701: GSDNLGS

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.