Factsheet for Zm00001d023704_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

endoplasmic reticulum 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	endoplasmic reticulum, mitochondrion, plasma membrane
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83839	Canola	mitochondrion	17.08	45.71
Zm00001d053166_P001	Maize	nucleus	22.42	42.57
Bra029293.1-P	Field mustard	nucleus	27.76	32.1
Zm00001d003011_P001	Maize	nucleus	15.3	21.39
Zm00001d006004_P001	Maize	nucleus	24.2	20.18
AT1G43950.1	Thale cress	nucleus	15.3	19.37
Bra015374.1-P	Field mustard	nucleus	24.91	16.24
Zm00001d043431_P012	Maize	nucleus	35.59	14.45
Zm00001d012731_P010	Maize	nucleus	35.23	14.35
Zm00001d043922_P001	Maize	nucleus	35.59	14.12
Zm00001d038698_P001	Maize	nucleus	32.38	13.38
Zm00001d026694_P001	Maize	nucleus	16.73	12.84
Zm00001d039006_P007	Maize	nucleus	33.81	12.37
Zm00001d002929_P001	Maize	nucleus	21.71	11.89
Zm00001d030803_P001	Maize	nucleus	13.52	11.18
Zm00001d014013_P002	Maize	nucleus	25.27	11.02
Zm00001d000358_P001	Maize	nucleus	25.98	10.43
Zm00001d032683_P001	Maize	nucleus	25.27	10.43
Solyc05g056040.2.1	Tomato	nucleus	23.84	10.31
Zm00001d025871_P001	Maize	nucleus	21.35	10.2
PGSC0003DMT400059999	Potato	nucleus	23.13	10.0
Zm00001d026687_P001	Maize	nucleus	16.37	9.96
Zm00001d051172_P001	Maize	nucleus	24.91	9.85
Zm00001d017284_P001	Maize	nucleus	24.56	9.76
Zm00001d014507_P002	Maize	nucleus	24.2	9.38
Zm00001d030801_P001	Maize	nucleus	14.59	9.19

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	UniProt:A0A1D6IUX2	ProteinID:AQK39818.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003340
InterPro:IPR015300	PFAM:PF02362	PANTHER:PTHR31384	PANTHER:PTHR31384:SF69	SMART:SM01019	SUPFAM:SSF101936
TMHMM:TMhelix	UniParc:UPI0008458FEE	EnsemblPlantsGene:Zm00001d023704	EnsemblPlants:Zm00001d023704_P001	EnsemblPlants:Zm00001d023704_T001	:

Description

No Description!

Coordinates

chr10:-:16366024..16371198

Molecular Weight (calculated)

32377.6 Da

IEP (calculated)

7.615

GRAVY (calculated)

-0.094

Length

281 amino acids

Sequence
(BLAST)

001: MAIMMRRCEL PARDLCHLDL LFVMGLRPIS DRLGMVRDFQ NRNDIFVFLL NTKAGGLQGE PTSPYPEPHE PERCNIHSFC KTLTTSDTST HGGFSVLRRL
101: VEEGLPQLDM THNPPWQELV AKDLHGNEWY FCHIFRGQPR RHLLMTDWSV FVSSKRLVSG DTFIFLSVTA LHVKVVLYIY ICFLALLNFW INLLTVLHLI
201: EVRTKSCGSG STLAAKMYVH TVGTPAYIAH DVLLKKEYNG KRITIPEIRN HPWFLKNLLA DLMDDSMMSK QYEEPEQPMQ T

Best Arabidopsis Sequence Match ( AT1G59750.1 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.