Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81024 | Canola | cytosol | 10.81 | 34.78 |
| Bra029293.1-P | Field mustard | nucleus | 20.72 | 18.93 |
| Zm00001d023704_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 19.37 | 15.3 |
| AT2G33860.1 | Thale cress | nucleus | 35.14 | 12.83 |
| Bra015374.1-P | Field mustard | nucleus | 22.52 | 11.6 |
| PGSC0003DMT400059999 | Potato | nucleus | 31.98 | 10.92 |
| Solyc05g056040.2.1 | Tomato | nucleus | 31.53 | 10.77 |
| AT4G30080.1 | Thale cress | nucleus | 31.98 | 10.6 |
| AT2G28350.1 | Thale cress | nucleus | 31.53 | 10.1 |
| AT1G77850.2 | Thale cress | nucleus | 25.23 | 9.4 |
| ATMG00940.1 | Thale cress | cytosol | 1.35 | 1.83 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.40.330.10 | EntrezGene:840994 | ProteinID:AAF79686.1 | ProteinID:AEE32008.1 | Symbol:ARF23 |
| ArrayExpress:AT1G43950 | EnsemblPlantsGene:AT1G43950 | RefSeq:AT1G43950 | TAIR:AT1G43950 | RefSeq:AT1G43950-TAIR-G | EnsemblPlants:AT1G43950.1 |
| TAIR:AT1G43950.1 | Unigene:At.52022 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR003340 | InterPro:IPR015300 | RefSeq:NP_175062.1 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF1 | UniProt:Q9LP07 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI000016304A | : |
Description
ARF23Putative auxin response factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP07]
Coordinates
chr1:-:16672582..16673952
Molecular Weight (calculated)
24822.6 Da
IEP (calculated)
4.828
GRAVY (calculated)
-0.264
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MESGNVVNVQ SELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS TREELNELQP NCDLPSKLQC RVIAIHLKVE NNSDETYVEI
101: TLMPDTTQVV IPTENENQFR PIVNSFTKVL TASDTSAQGE FSVPCKHAIE CLPPLDMSQP IPAQELIAID LHGNQWRFKH SYRVPRGDTT GWNAFTTSKK
201: LVVGDVIVFA RGETGELRVG IR
101: TLMPDTTQVV IPTENENQFR PIVNSFTKVL TASDTSAQGE FSVPCKHAIE CLPPLDMSQP IPAQELIAID LHGNQWRFKH SYRVPRGDTT GWNAFTTSKK
201: LVVGDVIVFA RGETGELRVG IR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.